U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Actin-binding FH2 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830670, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Actin-binding FH2 protein
    Primary source
    TAIR:AT5G07770
    Locus tag
    AT5G07770
    See related
    Araport:AT5G07770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFH16; FH16; formin homolog 16; MBK20.23; MBK20_23
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (2474059..2479466)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene actin binding protein Neighboring gene formin homology 2 domain-containing protein / FH2 domain-containing protein Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtFH16, [corrected] an Arabidopsis type II formin, binds and bundles both microfilaments and microtubules, and preferentially binds to microtubules. Wang J, et al. J Integr Plant Biol, 2013 Nov. PMID 23802884
    2. Arabidopsis formin 2 regulates cell-to-cell trafficking by capping and stabilizing actin filaments at plasmodesmata. Diao M, et al. Elife, 2018 Aug 16. PMID 30113309, Free PMC Article
    3. Formin homology 2 domains occur in multiple contexts in angiosperms. Cvrcková F, et al. BMC Genomics, 2004 Jul 15. PMID 15256004, Free PMC Article
    4. Formins: intermediates in signal-transduction cascades that affect cytoskeletal reorganization. Deeks MJ, et al. Trends Plant Sci, 2002 Nov. PMID 12417149
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001203322.2
    NM_001342961.1
    NM_120859.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Actin-binding FH2 protein
    NP_001190251.1
    • Actin-binding FH2 protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1).
    NP_196394.2
    • Actin-binding FH2 protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 32498 Blast hits to 13926 proteins in 764 species: Archae - 52; Bacteria - 3235; Metazoa - 13136; Fungi - 3419; Plants - 6778; Viruses - 1558; Other Eukaryotes - 4320 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2474059..2479466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342960.1 → NP_001332695.1  Actin-binding FH2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1R7T3E7, A0A5S9Y2C2, A0A654FZG7

    2. NM_120859.3 → NP_196394.2  Actin-binding FH2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196394.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FF15
      UniProtKB/TrEMBL
      A0A5S9Y2C2, A0A654FZG7
      Conserved Domains (1) summary
      pfam02181
      Location:182 → 546
      FH2; Formin Homology 2 Domain

    3. NM_001203322.2 → NP_001190251.1  Actin-binding FH2 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190251.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2C2, A0A654FZG7, F4K851
      Conserved Domains (1) summary
      pfam02181
      Location:179 → 519
      FH2; Formin Homology 2 Domain

    4. NM_001342961.1 → NP_001332694.1  Actin-binding FH2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHY1, A0A1R7T3E6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FF15.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.