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    CYSD1 cysteine synthase D1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819654, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYSD1
    Official Full Name
    cysteine synthase D1
    Primary source
    TAIR:AT3G04940
    Locus tag
    AT3G04940
    See related
    Araport:AT3G04940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCYSD1; CYSTEINE SYNTHASE; cysteine synthase D1; CYSTEINE SYNTHASE D1; T9J14.11; T9J14_11
    Summary
    Encodes cysteine synthase CysD1.
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    Genomic context

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    See CYSD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (1365090..1367844)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S24e family protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene low-molecular-weight cysteine-rich 41 Neighboring gene low-molecular-weight cysteine-rich 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. beta-Cyanoalanine synthase is a mitochondrial cysteine synthase-like protein in spinach and Arabidopsis. Hatzfeld Y, et al. Plant Physiol, 2000 Jul. PMID 10889265, Free PMC Article
    2. Three Arabidopsis genes encoding proteins with differential activities for cysteine synthase and beta-cyanoalanine synthase. Yamaguchi Y, et al. Plant Cell Physiol, 2000 Apr. PMID 10845460
    3. The role of cyanoalanine synthase and alternative oxidase in promoting salt stress tolerance in Arabidopsis thaliana. Xu F, et al. BMC Plant Biol, 2023 Mar 27. PMID 36973660, Free PMC Article
    4. Analysis of the Arabidopsis O-acetylserine(thiol)lyase gene family demonstrates compartment-specific differences in the regulation of cysteine synthesis. Heeg C, et al. Plant Cell, 2008 Jan. PMID 18223034, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The role of cyanoalanine synthase and alternative oxidase in promoting salt stress tolerance in Arabidopsis thaliana.
      Title: The role of cyanoalanine synthase and alternative oxidase in promoting salt stress tolerance in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337549.1
    NM_111366.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables L-3-cyanoalanine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cysteine synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cysteine synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables cysteine synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cysteine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cysteine biosynthetic process from serine IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    cysteine synthase D1
    NP_566243.1
    • cysteine synthase D1 (CYSD1); CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase D2 (TAIR:AT5G28020.6); Has 20420 Blast hits to 20399 proteins in 2652 species: Archae - 388; Bacteria - 14071; Metazoa - 381; Fungi - 621; Plants - 546; Viruses - 2; Other Eukaryotes - 4411 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1365090..1367844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111366.4 → NP_566243.1  cysteine synthase D1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566243.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAQ6, Q9CAV8, Q9S6Z7
      UniProtKB/TrEMBL
      A0A178VGG1, A0A5S9X949
      Conserved Domains (2) summary
      PLN02565
      Location:4 → 321
      PLN02565; cysteine synthase
      PLN00011
      Location:2 → 324
      PLN00011; cysteine synthase

    2. NM_001337549.1 → NP_001325893.1  cysteine synthase D1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAQ6, Q9CAV8, Q9S6Z7
      UniProtKB/TrEMBL
      A0A178VGG1, A0A5S9X949
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S6Z7.1

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