LOCUS NM_111366 1529 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana cysteine synthase D1 (CYSD1), mRNA.
ACCESSION NM_111366
VERSION NM_111366.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1529)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1529)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1529)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1529)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111366.3.
FEATURES Location/Qualifiers
source 1..1529
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1529
/gene="CYSD1"
/locus_tag="AT3G04940"
/gene_synonym="ATCYSD1; CYSTEINE SYNTHASE; cysteine
synthase D1; CYSTEINE SYNTHASE D1; T9J14.11; T9J14_11"
/note="Encodes cysteine synthase CysD1."
/db_xref="Araport:AT3G04940"
/db_xref="GeneID:819654"
/db_xref="TAIR:AT3G04940"
CDS 219..1193
/gene="CYSD1"
/locus_tag="AT3G04940"
/gene_synonym="ATCYSD1; CYSTEINE SYNTHASE; cysteine
synthase D1; CYSTEINE SYNTHASE D1; T9J14.11; T9J14_11"
/inference="Similar to RNA sequence,
EST:INSD:DR239862.1,INSD:EH873165.1,INSD:DR239870.1,
INSD:BP798569.1,INSD:EL269772.1,INSD:AV806018.1,
INSD:EH807510.1,INSD:BP628322.1,INSD:DR239868.1,
INSD:DR239865.1,INSD:DR239866.1,INSD:BP841518.1,
INSD:EH989729.1,INSD:DR239875.1,INSD:ES031543.1,
INSD:BP783980.1,INSD:CB256505.1,INSD:DR239872.1,
INSD:DR239864.1,INSD:BP841670.1,INSD:AV829421.1,
INSD:EL231364.1,INSD:EL297166.1,INSD:DR239874.1,
INSD:ES158527.1,INSD:DR239871.1,INSD:ES130313.1,
INSD:BP609339.1,INSD:H36068.1,INSD:EL291901.1,
INSD:ES083308.1,INSD:EL216710.1,INSD:BP784124.1,
INSD:ES176739.1,INSD:DR239873.1,INSD:EH808655.1,
INSD:R30167.1,INSD:DR376015.1,INSD:DR239869.1,
INSD:DR239867.1,INSD:EL317002.1,INSD:DR239861.1,
INSD:EL255511.1,INSD:EH821502.1,INSD:BP786213.1,
INSD:EL280016.1,INSD:DR239863.1,INSD:EL030955.1,
INSD:EL281560.1,INSD:EL073338.1,INSD:BX834294.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AB024284.1,INSD:AY087675.1,INSD:AY136420.1,
INSD:AJ011603.1,INSD:BX826061.1,INSD:BT008721.1"
/note="cysteine synthase D1 (CYSD1); CONTAINS InterPro
DOMAIN/s: Cysteine synthase/cystathionine beta-synthase
P-phosphate-binding site (InterPro:IPR001216), Cysteine
synthase A (InterPro:IPR005859), Pyridoxal
phosphate-dependent enzyme, beta subunit
(InterPro:IPR001926), Cysteine synthase K/M
(InterPro:IPR005856); BEST Arabidopsis thaliana protein
match is: cysteine synthase D2 (TAIR:AT5G28020.6); Has
20420 Blast hits to 20399 proteins in 2652 species: Archae
- 388; Bacteria - 14071; Metazoa - 381; Fungi - 621;
Plants - 546; Viruses - 2; Other Eukaryotes - 4411
(source: NCBI BLink)."
/codon_start=1
/product="cysteine synthase D1"
/protein_id="NP_566243.1"
/db_xref="GeneID:819654"
/db_xref="TAIR:AT3G04940"
/db_xref="Araport:AT3G04940"
/translation="MEEDRCSIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEP
CSSVKERIAYGMIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPS
SMSLERKIILLALGAEVHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTH
YRTTGPEIWRDSAGEVDILVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISG
GKPGTHLIQGIGAGLIPDNLDFNVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAA
AAAAIKVAKRPENAGKLIVVIFPSGGERYLSTSLFESVRHEAENLPIQ"
ORIGIN
1 ggaagataca tgattatttt ttataaatgt ataaacgagt ggatatattt ggtggtggat
61 gatggtgtgt gtgtatatgc aaataattca ctttataaaa gcttatcgct aatttgacag
121 aacactagaa cagttctctc tttttgtcga cagtcttctt cttcttcttc ttcttcgatt
181 ggatctggaa ctgaactcaa attgggaaga attttgacat ggaggaggac cggtgttcga
241 tcaaggatga tgcaactcaa ttgataggta acaccccaat ggtatatctg aacaacattg
301 tggatggttg tgtagctcgt attgcagcta agcttgaaat gatggagcct tgctctagtg
361 tcaaggagcg aattgcttat ggtatgatta aagatgcaga agacaaggga ttgattactc
421 ctgggaagag cacactgatt gaggctacct ctggtaacac cgggattggt ttagccttca
481 tcggtgcagc taaaggttac aaagtggtcc tcacaatgcc ctcatcaatg agccttgaga
541 gaaaaatcat tcttttagca ttaggtgcgg aggttcacct cacagatcct agtaaaggcg
601 ttcaaggaat aatcgacaaa gctgaagaga tatgtagcaa aaatccagat agtatcatgc
661 tagaacagtt caaaaatcct tcaaacccgc aaactcatta tcgaaccacg ggtccagaga
721 tatggagaga ctctgcaggg gaagtagaca tattggttgc cggtgttgga actggtggaa
781 cgctttccgg atcaggaaga ttcctcaagg agaagaataa agactttaag gtttatggtg
841 tggaacctac agaaagtgcg gtaataagtg gaggcaaacc gggtacacat ttgatccaag
901 gtattggggc tggactcatc ccagacaatt tggatttcaa cgttcttgat gaagtcatcc
961 aagtgacaag tgtggaagca attgaaacag ccaaacttct tgccctgaaa gaaggattac
1021 tggtgggaat atcttctgga gctgctgcag ccgctgcgat aaaggtggca aagcggccag
1081 aaaacgccgg caaactcata gttgtgattt tccctagcgg tggggaacgt tacctatcga
1141 cctcattgtt cgaatcagtc agacatgaag cagagaattt gccaattcaa tgaggctttt
1201 acacgacctg acttggttcg ttttggtgaa aaagtaccaa gatttcggtt cgacatttac
1261 actgtcatag tttcatgaac tttaagattt cagatgatgt atgatctcta atctctagcc
1321 tctaaggtgg actgtccttt gacattctat tggtggtttt tttctagcta atatatgtgt
1381 aagtctgtaa aacttttgtt gacaatgaat ctagaactat ataatggcca tgtaggattt
1441 caacccatgt tactagtagt agacaatttg gctagaggat tgtggaagag gaaaaagatc
1501 agaggacaag agactataaa caaacacat
//