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Arabidopsis thaliana cysteine synthase D1 (CYSD1), mRNA

NCBI Reference Sequence: NM_111366.4

FASTA Graphics 

LOCUS       NM_111366               1529 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana cysteine synthase D1 (CYSD1), mRNA.
ACCESSION   NM_111366
VERSION     NM_111366.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1529)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1529)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1529)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_111366.3.
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..1529
                     /gene="CYSD1"
                     /locus_tag="AT3G04940"
                     /gene_synonym="ATCYSD1; CYSTEINE SYNTHASE; cysteine
                     synthase D1; CYSTEINE SYNTHASE D1; T9J14.11; T9J14_11"
                     /note="Encodes cysteine synthase CysD1."
                     /db_xref="Araport:AT3G04940"
                     /db_xref="GeneID:819654"
                     /db_xref="TAIR:AT3G04940"
     CDS             219..1193
                     /gene="CYSD1"
                     /locus_tag="AT3G04940"
                     /gene_synonym="ATCYSD1; CYSTEINE SYNTHASE; cysteine
                     synthase D1; CYSTEINE SYNTHASE D1; T9J14.11; T9J14_11"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR239862.1,INSD:EH873165.1,INSD:DR239870.1,
                     INSD:BP798569.1,INSD:EL269772.1,INSD:AV806018.1,
                     INSD:EH807510.1,INSD:BP628322.1,INSD:DR239868.1,
                     INSD:DR239865.1,INSD:DR239866.1,INSD:BP841518.1,
                     INSD:EH989729.1,INSD:DR239875.1,INSD:ES031543.1,
                     INSD:BP783980.1,INSD:CB256505.1,INSD:DR239872.1,
                     INSD:DR239864.1,INSD:BP841670.1,INSD:AV829421.1,
                     INSD:EL231364.1,INSD:EL297166.1,INSD:DR239874.1,
                     INSD:ES158527.1,INSD:DR239871.1,INSD:ES130313.1,
                     INSD:BP609339.1,INSD:H36068.1,INSD:EL291901.1,
                     INSD:ES083308.1,INSD:EL216710.1,INSD:BP784124.1,
                     INSD:ES176739.1,INSD:DR239873.1,INSD:EH808655.1,
                     INSD:R30167.1,INSD:DR376015.1,INSD:DR239869.1,
                     INSD:DR239867.1,INSD:EL317002.1,INSD:DR239861.1,
                     INSD:EL255511.1,INSD:EH821502.1,INSD:BP786213.1,
                     INSD:EL280016.1,INSD:DR239863.1,INSD:EL030955.1,
                     INSD:EL281560.1,INSD:EL073338.1,INSD:BX834294.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AB024284.1,INSD:AY087675.1,INSD:AY136420.1,
                     INSD:AJ011603.1,INSD:BX826061.1,INSD:BT008721.1"
                     /note="cysteine synthase D1 (CYSD1); CONTAINS InterPro
                     DOMAIN/s: Cysteine synthase/cystathionine beta-synthase
                     P-phosphate-binding site (InterPro:IPR001216), Cysteine
                     synthase A (InterPro:IPR005859), Pyridoxal
                     phosphate-dependent enzyme, beta subunit
                     (InterPro:IPR001926), Cysteine synthase K/M
                     (InterPro:IPR005856); BEST Arabidopsis thaliana protein
                     match is: cysteine synthase D2 (TAIR:AT5G28020.6); Has
                     20420 Blast hits to 20399 proteins in 2652 species: Archae
                     - 388; Bacteria - 14071; Metazoa - 381; Fungi - 621;
                     Plants - 546; Viruses - 2; Other Eukaryotes - 4411
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="cysteine synthase D1"
                     /protein_id="NP_566243.1"
                     /db_xref="GeneID:819654"
                     /db_xref="TAIR:AT3G04940"
                     /db_xref="Araport:AT3G04940"
                     /translation="MEEDRCSIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEP
                     CSSVKERIAYGMIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPS
                     SMSLERKIILLALGAEVHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTH
                     YRTTGPEIWRDSAGEVDILVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISG
                     GKPGTHLIQGIGAGLIPDNLDFNVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAA
                     AAAAIKVAKRPENAGKLIVVIFPSGGERYLSTSLFESVRHEAENLPIQ"
ORIGIN      
        1 ggaagataca tgattatttt ttataaatgt ataaacgagt ggatatattt ggtggtggat
       61 gatggtgtgt gtgtatatgc aaataattca ctttataaaa gcttatcgct aatttgacag
      121 aacactagaa cagttctctc tttttgtcga cagtcttctt cttcttcttc ttcttcgatt
      181 ggatctggaa ctgaactcaa attgggaaga attttgacat ggaggaggac cggtgttcga
      241 tcaaggatga tgcaactcaa ttgataggta acaccccaat ggtatatctg aacaacattg
      301 tggatggttg tgtagctcgt attgcagcta agcttgaaat gatggagcct tgctctagtg
      361 tcaaggagcg aattgcttat ggtatgatta aagatgcaga agacaaggga ttgattactc
      421 ctgggaagag cacactgatt gaggctacct ctggtaacac cgggattggt ttagccttca
      481 tcggtgcagc taaaggttac aaagtggtcc tcacaatgcc ctcatcaatg agccttgaga
      541 gaaaaatcat tcttttagca ttaggtgcgg aggttcacct cacagatcct agtaaaggcg
      601 ttcaaggaat aatcgacaaa gctgaagaga tatgtagcaa aaatccagat agtatcatgc
      661 tagaacagtt caaaaatcct tcaaacccgc aaactcatta tcgaaccacg ggtccagaga
      721 tatggagaga ctctgcaggg gaagtagaca tattggttgc cggtgttgga actggtggaa
      781 cgctttccgg atcaggaaga ttcctcaagg agaagaataa agactttaag gtttatggtg
      841 tggaacctac agaaagtgcg gtaataagtg gaggcaaacc gggtacacat ttgatccaag
      901 gtattggggc tggactcatc ccagacaatt tggatttcaa cgttcttgat gaagtcatcc
      961 aagtgacaag tgtggaagca attgaaacag ccaaacttct tgccctgaaa gaaggattac
     1021 tggtgggaat atcttctgga gctgctgcag ccgctgcgat aaaggtggca aagcggccag
     1081 aaaacgccgg caaactcata gttgtgattt tccctagcgg tggggaacgt tacctatcga
     1141 cctcattgtt cgaatcagtc agacatgaag cagagaattt gccaattcaa tgaggctttt
     1201 acacgacctg acttggttcg ttttggtgaa aaagtaccaa gatttcggtt cgacatttac
     1261 actgtcatag tttcatgaac tttaagattt cagatgatgt atgatctcta atctctagcc
     1321 tctaaggtgg actgtccttt gacattctat tggtggtttt tttctagcta atatatgtgt
     1381 aagtctgtaa aacttttgtt gacaatgaat ctagaactat ataatggcca tgtaggattt
     1441 caacccatgt tactagtagt agacaatttg gctagaggat tgtggaagag gaaaaagatc
     1501 agaggacaag agactataaa caaacacat
//
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