U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ribosomal protein S24e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819652, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ribosomal protein S24e family protein
    Primary source
    TAIR:AT3G04920
    Locus tag
    AT3G04920
    See related
    Araport:AT3G04920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J14.13; T9J14_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1360837..1362449)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene with no lysine (K) kinase 1 Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene cysteine synthase D1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    4. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_111364.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ribosomal protein S24e family protein
    NP_187143.1
    • Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1360837..1362449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337548.1 → NP_001326005.1  Ribosomal protein S24e family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMY7

    2. NM_111364.3 → NP_187143.1  Ribosomal protein S24e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SS17
      UniProtKB/TrEMBL
      A0A178US36, A0A178VB55, A0A5S9X989, A0A5S9Y7X3
      Conserved Domains (1) summary
      cl00878
      Location:5 → 132
      Ribosomal_S24e; Ribosomal protein S24e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SS17.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools