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Conserved domains on  [gi|15229845|ref|NP_187143|]
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Ribosomal protein S24e family protein [Arabidopsis thaliana]

Protein Classification

eS24 family ribosomal protein( domain architecture ID 1077)

eS24 family ribosomal protein such as archaea 30S ribosomal protein S24, and fungi 40S ribosomal protein S24

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_S24e super family cl00878
Ribosomal protein S24e;
5-132 7.08e-43

Ribosomal protein S24e;


The actual alignment was detected with superfamily member PTZ00071:

Pssm-ID: 469970  Cd Length: 132  Bit Score: 137.47  E-value: 7.08e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845    5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESA 84
Cdd:PTZ00071   5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL 84
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15229845   85 KKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132
Cdd:PTZ00071  85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
 
Name Accession Description Interval E-value
PTZ00071 PTZ00071
40S ribosomal protein S24; Provisional
5-132 7.08e-43

40S ribosomal protein S24; Provisional


Pssm-ID: 240256  Cd Length: 132  Bit Score: 137.47  E-value: 7.08e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845    5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESA 84
Cdd:PTZ00071   5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL 84
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15229845   85 KKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132
Cdd:PTZ00071  85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Ribosomal_S24e pfam01282
Ribosomal protein S24e;
25-104 1.01e-24

Ribosomal protein S24e;


Pssm-ID: 460147  Cd Length: 79  Bit Score: 89.86  E-value: 1.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845    25 VIDVLHPGRANVSKAELKEKLARMYEVkDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104
Cdd:pfam01282   1 VFDVLHPGKATPSRKEIREKLAAMYNV-DPDLVVVFGLRTHFGGGKSTGFAKIYDSLEAAKKFEPKHRLARNGLAEKKKA 79
RPS24A COG2004
Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
16-104 3.91e-11

Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S24E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441607  Cd Length: 97  Bit Score: 55.61  E-value: 3.91e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845  16 NRLLSRKQFVIDVLHPGrANVSKAELKEKLARMYEVkDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95
Cdd:COG2004  11 NPLLNRREVKFTVTHEG-ATPSRKEVREKLAAMLNV-DKELVVVDKLKTEFGKGESKGYAKVYDDEERAKKIEPEYILKR 88

                ....*....
gi 15229845  96 NGLDTKIEK 104
Cdd:COG2004  89 NKIKEEEEE 97
 
Name Accession Description Interval E-value
PTZ00071 PTZ00071
40S ribosomal protein S24; Provisional
5-132 7.08e-43

40S ribosomal protein S24; Provisional


Pssm-ID: 240256  Cd Length: 132  Bit Score: 137.47  E-value: 7.08e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845    5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESA 84
Cdd:PTZ00071   5 EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAAL 84
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 15229845   85 KKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132
Cdd:PTZ00071  85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Ribosomal_S24e pfam01282
Ribosomal protein S24e;
25-104 1.01e-24

Ribosomal protein S24e;


Pssm-ID: 460147  Cd Length: 79  Bit Score: 89.86  E-value: 1.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845    25 VIDVLHPGRANVSKAELKEKLARMYEVkDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEK 104
Cdd:pfam01282   1 VFDVLHPGKATPSRKEIREKLAAMYNV-DPDLVVVFGLRTHFGGGKSTGFAKIYDSLEAAKKFEPKHRLARNGLAEKKKA 79
RPS24A COG2004
Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
16-104 3.91e-11

Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S24E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441607  Cd Length: 97  Bit Score: 55.61  E-value: 3.91e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845  16 NRLLSRKQFVIDVLHPGrANVSKAELKEKLARMYEVkDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95
Cdd:COG2004  11 NPLLNRREVKFTVTHEG-ATPSRKEVREKLAAMLNV-DKELVVVDKLKTEFGKGESKGYAKVYDDEERAKKIEPEYILKR 88

                ....*....
gi 15229845  96 NGLDTKIEK 104
Cdd:COG2004  89 NKIKEEEEE 97
rps24e PRK01178
30S ribosomal protein S24e; Reviewed
16-98 3.44e-10

30S ribosomal protein S24e; Reviewed


Pssm-ID: 179239  Cd Length: 99  Bit Score: 52.96  E-value: 3.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229845   16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVkDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95
Cdd:PRK01178  11 NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYAKVYDDKERARKIEPKYILER 89

                 ...
gi 15229845   96 NGL 98
Cdd:PRK01178  90 NKI 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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