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    zinc finger (Ran-binding) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841947, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger (Ran-binding) family protein
    Primary source
    TAIR:AT1G55040
    Locus tag
    AT1G55040
    See related
    Araport:AT1G55040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14C21.55; F14C21_55
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (20534874..20539189)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lipoxygenase 1 Neighboring gene RNI-like superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene ubiquitin 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A RanBP2-type zinc finger protein functions in intron splicing in Arabidopsis mitochondria and is involved in the biogenesis of respiratory complex I. Bentolila S, et al. Nucleic Acids Res, 2021 Apr 6. PMID 33660772, Free PMC Article
    2. Arabidopsis mitochondrial protein slow embryo development1 is essential for embryo development. Ju Y, et al. Biochem Biophys Res Commun, 2016 May 27. PMID 27109472
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A RanBP2-type zinc finger protein functions in intron splicing in Arabidopsis mitochondria and is involved in the biogenesis of respiratory complex I.
      Title: A RanBP2-type zinc finger protein functions in intron splicing in Arabidopsis mitochondria and is involved in the biogenesis of respiratory complex I.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104378.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger (Ran-binding) family protein
    NP_564674.1
    • zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: cultured cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.1); Has 22562 Blast hits to 12307 proteins in 1055 species: Archae - 52; Bacteria - 6108; Metazoa - 7873; Fungi - 2055; Plants - 2458; Viruses - 215; Other Eukaryotes - 3801 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20534874..20539189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104378.2 → NP_564674.1  zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564674.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q949M6, Q9C7M2
      Conserved Domains (2) summary
      sd00029
      Location:375 → 394
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:371 → 399
      zf-RanBP; Zn-finger in Ran binding protein and others
    Nucleotide Protein
    Heading Accession and Version

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