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Conserved domains on  [gi|18405190|ref|NP_564674|]
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zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10457766)

zinc finger Ran-binding domain-containing protein similar to Arabidopsis thaliana chloroplastic zinc finger protein VAR3, which is involved in C-to-U editing of chloroplastic RNA

CATH:  2.20.28.140
Gene Ontology:  GO:0008270|GO:0003723
PubMed:  19505478|17210253|11179890|12665246
SCOP:  4000343

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
371-399 1.79e-07

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 47.73  E-value: 1.79e-07
                          10        20
                  ....*....|....*....|....*....
gi 18405190   371 KKGDWLCPKCDFMNFAKNTICLQCDAKRP 399
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
404-432 5.24e-04

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 38.10  E-value: 5.24e-04
                          10        20
                  ....*....|....*....|....*....
gi 18405190   404 LPGEWECPECNFLNYRRNMACFHCDCKRP 432
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
371-399 1.79e-07

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 47.73  E-value: 1.79e-07
                          10        20
                  ....*....|....*....|....*....
gi 18405190   371 KKGDWLCPKCDFMNFAKNTICLQCDAKRP 399
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 373-396 5.18e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 40.76  E-value: 5.18e-05
                           10        20
                   ....*....|....*....|....
gi 18405190    373 GDWLCPKCDFMNFAKNTICLQCDA 396
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
404-432 5.24e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 38.10  E-value: 5.24e-04
                          10        20
                  ....*....|....*....|....*....
gi 18405190   404 LPGEWECPECNFLNYRRNMACFHCDCKRP 432
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 406-428 1.70e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 36.53  E-value: 1.70e-03
                           10        20
                   ....*....|....*....|...
gi 18405190    406 GEWECPECNFLNYRRNMACFHCD 428
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACG 23
 
Name Accession Description Interval E-value
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
371-399 1.79e-07

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 47.73  E-value: 1.79e-07
                          10        20
                  ....*....|....*....|....*....
gi 18405190   371 KKGDWLCPKCDFMNFAKNTICLQCDAKRP 399
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 373-396 5.18e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 40.76  E-value: 5.18e-05
                           10        20
                   ....*....|....*....|....
gi 18405190    373 GDWLCPKCDFMNFAKNTICLQCDA 396
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
404-432 5.24e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 38.10  E-value: 5.24e-04
                          10        20
                  ....*....|....*....|....*....
gi 18405190   404 LPGEWECPECNFLNYRRNMACFHCDCKRP 432
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 406-428 1.70e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 36.53  E-value: 1.70e-03
                           10        20
                   ....*....|....*....|...
gi 18405190    406 GEWECPECNFLNYRRNMACFHCD 428
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACG 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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