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    CBSX5 Cystathionine beta-synthase (CBS) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828855, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CBSX5
    Official Full Name
    Cystathionine beta-synthase (CBS) family protein
    Primary source
    TAIR:AT4G27460
    Locus tag
    AT4G27460
    See related
    Araport:AT4G27460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CBS domain containing protein 5; F27G19.60; F27G19_60
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    Genomic context

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    See CBSX5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (13732832..13734531)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene fiber (DUF1218) Neighboring gene protochlorophyllide oxidoreductase B Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene RING membrane-anchor 3 Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118881.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cystathionine beta-synthase (CBS) family protein
    NP_194476.2
    • Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT5G53750.1); Has 145 Blast hits to 145 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13732832..13734531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118881.3 → NP_194476.2  Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194476.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0V7Z3, Q5HZ39, Q84WQ5, Q9SZS1
      UniProtKB/TrEMBL
      A0A178V3C0, A0A654FTI6
      Conserved Domains (1) summary
      pfam00571
      Location:334 → 385
      CBS; CBS domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WQ5.2

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