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    transmembrane protein, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834992, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1218)
    Primary source
    TAIR:AT5G49320
    Locus tag
    AT5G49320
    See related
    Araport:AT5G49320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K21P3.22; K21P3_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (19994994..19996357, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene importin subunit alpha Neighboring gene ncRNA Neighboring gene importin alpha isoform 5 Neighboring gene myb domain protein 111 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124309.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1218)
    NP_199743.1
    • Protein of unknown function (DUF1218); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19994994..19996357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124309.4 → NP_199743.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCY8, A0A654G9Z4, Q9FJ08
      Conserved Domains (1) summary
      pfam06749
      Location:79 → 181
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version

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