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Conserved domains on  [gi|15239853|ref|NP_199743|]
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transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

Protein Classification

DUF1218 domain-containing protein( domain architecture ID 10535928)

DUF1218 domain-containing protein similar to Triticum aestivum salt stress protein 3 and Xenopus tropicalis prominin-1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1218 pfam06749
Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of ...
 79-182 4.40e-16

Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.


:

Pssm-ID: 462000  Cd Length: 95  Bit Score: 71.51  E-value: 4.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239853    79 AFVGLAVAMVGFHMYLLIAVTTspslvlvewdPDSVPAKRLTFQAAFFFVSTWVCFGVGEVLLLVALSVESGHLKNWS-K 157
Cdd:pfam06749   1 AAVLLLLAQVIANVAGGCLCCG----------KGLRPSSANRTLAVVFFVLSWITFAIAEALLLAGASMNAYHTKRVHrG 70

                          90       100
                  ....*....|....*....|....*
gi 15239853   158 PKPSCLVIRQGLFSAAGVFSLITVF 182
Cdd:pfam06749  71 LDYSCPTLKTGVFAAGAILSLVTAL 95
 
Name Accession Description Interval E-value
DUF1218 pfam06749
Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of ...
 79-182 4.40e-16

Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.


Pssm-ID: 462000  Cd Length: 95  Bit Score: 71.51  E-value: 4.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239853    79 AFVGLAVAMVGFHMYLLIAVTTspslvlvewdPDSVPAKRLTFQAAFFFVSTWVCFGVGEVLLLVALSVESGHLKNWS-K 157
Cdd:pfam06749   1 AAVLLLLAQVIANVAGGCLCCG----------KGLRPSSANRTLAVVFFVLSWITFAIAEALLLAGASMNAYHTKRVHrG 70

                          90       100
                  ....*....|....*....|....*
gi 15239853   158 PKPSCLVIRQGLFSAAGVFSLITVF 182
Cdd:pfam06749  71 LDYSCPTLKTGVFAAGAILSLVTAL 95
 
Name Accession Description Interval E-value
DUF1218 pfam06749
Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of ...
 79-182 4.40e-16

Protein of unknown function (DUF1218); This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.


Pssm-ID: 462000  Cd Length: 95  Bit Score: 71.51  E-value: 4.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239853    79 AFVGLAVAMVGFHMYLLIAVTTspslvlvewdPDSVPAKRLTFQAAFFFVSTWVCFGVGEVLLLVALSVESGHLKNWS-K 157
Cdd:pfam06749   1 AAVLLLLAQVIANVAGGCLCCG----------KGLRPSSANRTLAVVFFVLSWITFAIAEALLLAGASMNAYHTKRVHrG 70

                          90       100
                  ....*....|....*....|....*
gi 15239853   158 PKPSCLVIRQGLFSAAGVFSLITVF 182
Cdd:pfam06749  71 LDYSCPTLKTGVFAAGAILSLVTAL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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