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    signal transducer/transcription protein, putative (DUF1685) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817714, updated on 18-Sep-2024

    Summary

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    Official Full Name
    signal transducer/transcription protein, putative (DUF1685)
    Primary source
    TAIR:AT2G31560
    Locus tag
    AT2G31560
    See related
    Araport:AT2G31560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9H9.8; T9H9_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (13436485..13438011)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SecY protein transport family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene glutathione peroxidase 2 Neighboring gene ncRNA Neighboring gene tRNAHis guanylyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336336.1
    NM_179838.2
    NM_201846.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    signal transducer/transcription protein, putative (DUF1685)
    NP_850169.1
    • Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT1G05870.4); Has 279 Blast hits to 279 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973575.1
    • Protein of unknown function (DUF1685); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT1G05870.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13436485..13438011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179838.2 → NP_850169.1  signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850169.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS25, A0A654EXV7, Q8VZ71
      Conserved Domains (1) summary
      pfam07939
      Location:98 → 157
      DUF1685; Protein of unknown function (DUF1685)

    2. NM_001336336.1 → NP_001325346.1  signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS25, A0A654EXV7, Q8VZ71
      Conserved Domains (1) summary
      pfam07939
      Location:98 → 157
      DUF1685; Protein of unknown function (DUF1685)

    3. NM_201846.2 → NP_973575.1  signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973575.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VS25, A0A654EXV7, Q8VZ71
      Conserved Domains (1) summary
      pfam07939
      Location:98 → 157
      DUF1685; Protein of unknown function (DUF1685)
    Nucleotide Protein
    Heading Accession and Version

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