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    SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841539, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT1G51160
    Locus tag
    AT1G51160
    See related
    Araport:AT1G51160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23H24.18; F23H24_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (18949532..18951891)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene DegP protease 6 Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtBET5 is essential for exine pattern formation and apical meristem organization in Arabidopsis. Zhang J, et al. Plant Sci, 2018 Sep. PMID 30080609
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Perturbation of the AtBET5 expression by RNAi leads to apical meristematic organization defects and reduced fertility as well. [AtBET5]
      Title: AtBET5 is essential for exine pattern formation and apical meristem organization in Arabidopsis.
    2. Arabidopsis BET5 (AtBET5) plays an essential role in exine pattern formation and apical meristem organization in plants. [AtBET5]
      Title: AtBET5 is essential for exine pattern formation and apical meristem organization in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001036091.3
    NM_001333465.1
    NM_103995.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within meristem structural organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNARE-like superfamily protein
    NP_001031168.1
    • SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G02280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175528.1
    • SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: cis-Golgi network; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sybindin-like protein (InterPro:IPR007233), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G02280.1); Has 707 Blast hits to 707 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 225; Plants - 108; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18949532..18951891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036091.3 → NP_001031168.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031168.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W178, A0A384KVJ5, Q9SYB8
      Conserved Domains (1) summary
      cd14855
      Location:24 → 164
      TRAPPC1_MUM2; Trafficking protein particle complex subunit 1

    2. NM_001333465.1 → NP_001322509.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W178, A0A384KVJ5, Q9SYB8
      Conserved Domains (1) summary
      cd14855
      Location:24 → 164
      TRAPPC1_MUM2; Trafficking protein particle complex subunit 1

    3. NM_103995.5 → NP_175528.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175528.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W178, A0A384KVJ5, Q9SYB8
      Conserved Domains (1) summary
      cd14855
      Location:24 → 164
      TRAPPC1_MUM2; Trafficking protein particle complex subunit 1
    Nucleotide Protein
    Heading Accession and Version

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