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    Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836201, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Heavy metal transport/detoxification superfamily protein
    Primary source
    TAIR:AT5G60800
    Locus tag
    AT5G60800
    See related
    Araport:AT5G60800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAE1.5; MAE1_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24460719..24462595, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nitrate transporter 2.3 Neighboring gene ABC transporter family protein Neighboring gene miscRNA Neighboring gene Putative membrane lipoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana. Zschiesche W, et al. New Phytol, 2015 Sep. PMID 25913773
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. HIPP3 acts via its bound zinc as an upstream regulator of the salicylate-dependent pathway of pathogen response and is also involved in abiotic stress responses and seed and flower development.[HIPP3]
      Title: The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001203653.1
    NM_125473.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Heavy metal transport/detoxification superfamily protein
    NP_001190582.1
    • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1).
    NP_200888.2
    • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24460719..24462595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125473.4 → NP_200888.2  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200888.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJH5
      UniProtKB/TrEMBL
      A0A178UCP2, A0A5S9YI72, A0A654GDB3
      Conserved Domains (1) summary
      pfam00403
      Location:28 → 77
      HMA; Heavy-metal-associated domain

    2. NM_001203653.1 → NP_001190582.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190582.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GDB3, F4K0H3
      Conserved Domains (1) summary
      pfam00403
      Location:28 → 77
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJH5.1

    Gene LinkOut

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