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    DUF4050 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838104, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF4050 family protein
    Primary source
    TAIR:AT1G15350
    Locus tag
    AT1G15350
    See related
    Araport:AT1G15350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.29; F9L1_29
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5278027..5279988, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cystathionine beta-synthase (CBS) protein Neighboring gene methyl-CPG-binding domain 10 Neighboring gene miscRNA Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332160.1
    NM_001332161.1
    NM_001332162.1
    NM_101404.3
    NM_179336.4
    NM_179337.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF4050 family protein
    NP_563972.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_849667.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_849668.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5278027..5279988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179337.2 → NP_849668.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849668.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    2. NM_001332160.1 → NP_001320998.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    3. NM_001332161.1 → NP_001320999.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    4. NM_001332162.1 → NP_001321000.1  DUF4050 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WPV4, A0A384LKR9, Q9XI35
      Conserved Domains (1) summary
      pfam13259
      Location:1 → 108
      DUF4050; Protein of unknown function (DUF4050)

    5. NM_179336.4 → NP_849667.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849667.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN02, A0A5S9UK34, Q8L920
      Conserved Domains (1) summary
      pfam13259
      Location:42 → 154
      DUF4050; Protein of unknown function (DUF4050)

    6. NM_101404.3 → NP_563972.1  DUF4050 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563972.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN02, A0A5S9UK34, Q8L920
      Conserved Domains (1) summary
      pfam13259
      Location:42 → 154
      DUF4050; Protein of unknown function (DUF4050)
    Nucleotide Protein
    Heading Accession and Version

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