NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|30684320|ref|NP_849668|]
View 

DUF4050 family protein [Arabidopsis thaliana]

Protein Classification

DUF4050 domain-containing protein( domain architecture ID 10593973)

DUF4050 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4050 pfam13259
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 1-108 2.18e-35

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


:

Pssm-ID: 463820  Cd Length: 124  Bit Score: 117.38  E-value: 2.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684320     1 MDNItFPSQ---GSLSSSNQTFDSQSAARNSN-APPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGA----------K 66
Cdd:pfam13259   5 FDNS-VQSPdsvSSISTSNQSLDERRRRRRRAlEEEMFWNEGLRLWNQRRDAWTGARTVRKVPKRLRESpsnpirasipP 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 30684320    67 LNWNtATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 108
Cdd:pfam13259  84 ASYP-AIYEKLVGQNKTPSVPINLSDMVDALVDGWKQEGEWP 124
 
Name Accession Description Interval E-value
DUF4050 pfam13259
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 1-108 2.18e-35

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


Pssm-ID: 463820  Cd Length: 124  Bit Score: 117.38  E-value: 2.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684320     1 MDNItFPSQ---GSLSSSNQTFDSQSAARNSN-APPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGA----------K 66
Cdd:pfam13259   5 FDNS-VQSPdsvSSISTSNQSLDERRRRRRRAlEEEMFWNEGLRLWNQRRDAWTGARTVRKVPKRLRESpsnpirasipP 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 30684320    67 LNWNtATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 108
Cdd:pfam13259  84 ASYP-AIYEKLVGQNKTPSVPINLSDMVDALVDGWKQEGEWP 124
 
Name Accession Description Interval E-value
DUF4050 pfam13259
Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. ...
 1-108 2.18e-35

Protein of unknown function (DUF4050); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 109 and 173 amino acids in length. There are two conserved sequence motifs: IPL and FLVD.


Pssm-ID: 463820  Cd Length: 124  Bit Score: 117.38  E-value: 2.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684320     1 MDNItFPSQ---GSLSSSNQTFDSQSAARNSN-APPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGA----------K 66
Cdd:pfam13259   5 FDNS-VQSPdsvSSISTSNQSLDERRRRRRRAlEEEMFWNEGLRLWNQRRDAWTGARTVRKVPKRLRESpsnpirasipP 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 30684320    67 LNWNtATYDSLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 108
Cdd:pfam13259  84 ASYP-AIYEKLVGQNKTPSVPINLSDMVDALVDGWKQEGEWP 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH