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    50S ribosomal protein L34 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839778, updated on 18-Sep-2024

    Summary

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    Official Full Name
    50S ribosomal protein L34
    Primary source
    TAIR:AT1G29040
    Locus tag
    AT1G29040
    See related
    Araport:AT1G29040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28N24.25; F28N24_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (10133983..10136124)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Apoptosis inhibitory protein 5 (API5) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 38 Neighboring gene ncRNA Neighboring gene Target SNARE coiled-coil domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis POT1A interacts with TERT-V(I8), an N-terminal splicing variant of telomerase. Rossignol P, et al. J Cell Sci, 2007 Oct 15. PMID 17911168
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036028.1
    NM_001332831.1
    NM_001332832.1
    NM_102645.4
    NM_179395.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    50S ribosomal protein L34
    NP_001031105.1
    • unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319103.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    NP_564317.1
    • unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    NP_849726.1
    • unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 190 Blast hits to 190 proteins in 92 species: Archae - 2; Bacteria - 141; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10133983..10136124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179395.2 → NP_849726.1  50S ribosomal protein L34 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849726.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HZV3, Q94K58
      Conserved Domains (1) summary
      TIGR02058
      Location:79 → 182
      lin0512_fam; conserved hypothetical protein

    2. NM_001332831.1 → NP_001319103.1  50S ribosomal protein L34 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W621, F4HZV2

    3. NM_102645.4 → NP_564317.1  50S ribosomal protein L34 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564317.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EFF9, Q8LDL9, Q94K58
      Conserved Domains (1) summary
      TIGR02058
      Location:79 → 197
      lin0512_fam; conserved hypothetical protein

    4. NM_001036028.1 → NP_001031105.1  50S ribosomal protein L34 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031105.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HZV4
      Conserved Domains (1) summary
      cl09807
      Location:79 → 118
      Lin0512_fam; Conserved hypothetical protein (Lin0512_fam)

    5. NM_001332832.1 → NP_001320973.1  50S ribosomal protein L34 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8API1, Q94K58
    Nucleotide Protein
    Heading Accession and Version

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