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Conserved domains on  [gi|18396927|ref|NP_564317|]
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50S ribosomal protein L34 [Arabidopsis thaliana]

Protein Classification

lin0512_fam family protein( domain architecture ID 10020193)

lin0512_fam family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lin0512_fam TIGR02058
conserved hypothetical protein; This family consists of few members, broadly distributed. It ...
 79-197 1.08e-61

conserved hypothetical protein; This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved]


:

Pssm-ID: 131113  Cd Length: 116  Bit Score: 187.31  E-value: 1.08e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396927    79 KLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRgSIPGVSFGEMKLQIKLGVPHSLhQQLDLDKVKSIFPYGK 158
Cdd:TIGR02058   1 KILFIEMGMGVDQHGQNITKAAMRAVRNAIASNSMPGIWE-SLPDSSLNEMIVEVKLAVPYDL-DQLDEDKVKAIIPYGT 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 18396927   159 IVnVEVVDGGLICSSGVLVEEMGDTNEDCYIVNVAVYVG 197
Cdd:TIGR02058  79 VT-VEVEDGGMITSSGIALEEKNDKNDLMYIVNAAVEVG 116
 
Name Accession Description Interval E-value
lin0512_fam TIGR02058
conserved hypothetical protein; This family consists of few members, broadly distributed. It ...
 79-197 1.08e-61

conserved hypothetical protein; This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved]


Pssm-ID: 131113  Cd Length: 116  Bit Score: 187.31  E-value: 1.08e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396927    79 KLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRgSIPGVSFGEMKLQIKLGVPHSLhQQLDLDKVKSIFPYGK 158
Cdd:TIGR02058   1 KILFIEMGMGVDQHGQNITKAAMRAVRNAIASNSMPGIWE-SLPDSSLNEMIVEVKLAVPYDL-DQLDEDKVKAIIPYGT 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 18396927   159 IVnVEVVDGGLICSSGVLVEEMGDTNEDCYIVNVAVYVG 197
Cdd:TIGR02058  79 VT-VEVEDGGMITSSGIALEEKNDKNDLMYIVNAAVEVG 116
Lin0512_fam pfam09585
Conserved hypothetical protein (Lin0512_fam); This family consists of few members, broadly ...
 80-196 6.47e-51

Conserved hypothetical protein (Lin0512_fam); This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a well conserved motif GxGxDxHG near the N-terminus.


Pssm-ID: 401502  Cd Length: 114  Bit Score: 160.02  E-value: 6.47e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396927    80 LLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGS-IPGVSFGEMKLQIKLGVPHslHQQLDLDKVKSIFPYGK 158
Cdd:pfam09585   1 RLFVEMGMGADLHGQDYTKAAVRAVRDAISHNSLPGLREIFgLPGGDLDNMKVDVKLGVPD--PEKVDLEAVKAVLPYGT 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 18396927   159 iVNVEVVDGGLICsSGVLVEEMGDTNEDCYIVNVAVYV 196
Cdd:pfam09585  79 -VTVEVVSGGLDV-SGIALPEMGDKNDDIVIANAAVTV 114
 
Name Accession Description Interval E-value
lin0512_fam TIGR02058
conserved hypothetical protein; This family consists of few members, broadly distributed. It ...
 79-197 1.08e-61

conserved hypothetical protein; This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved]


Pssm-ID: 131113  Cd Length: 116  Bit Score: 187.31  E-value: 1.08e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396927    79 KLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRgSIPGVSFGEMKLQIKLGVPHSLhQQLDLDKVKSIFPYGK 158
Cdd:TIGR02058   1 KILFIEMGMGVDQHGQNITKAAMRAVRNAIASNSMPGIWE-SLPDSSLNEMIVEVKLAVPYDL-DQLDEDKVKAIIPYGT 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 18396927   159 IVnVEVVDGGLICSSGVLVEEMGDTNEDCYIVNVAVYVG 197
Cdd:TIGR02058  79 VT-VEVEDGGMITSSGIALEEKNDKNDLMYIVNAAVEVG 116
Lin0512_fam pfam09585
Conserved hypothetical protein (Lin0512_fam); This family consists of few members, broadly ...
 80-196 6.47e-51

Conserved hypothetical protein (Lin0512_fam); This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a well conserved motif GxGxDxHG near the N-terminus.


Pssm-ID: 401502  Cd Length: 114  Bit Score: 160.02  E-value: 6.47e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396927    80 LLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGS-IPGVSFGEMKLQIKLGVPHslHQQLDLDKVKSIFPYGK 158
Cdd:pfam09585   1 RLFVEMGMGADLHGQDYTKAAVRAVRDAISHNSLPGLREIFgLPGGDLDNMKVDVKLGVPD--PEKVDLEAVKAVLPYGT 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 18396927   159 iVNVEVVDGGLICsSGVLVEEMGDTNEDCYIVNVAVYV 196
Cdd:pfam09585  79 -VTVEVVSGGLDV-SGIALPEMGDKNDDIVIANAAVTV 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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