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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816226, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT2G17210
    Locus tag
    AT2G17210
    See related
    Araport:AT2G17210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23A1.7; T23A1_7
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (7485398..7487608, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ubiquitin family protein Neighboring gene ubiquitin family protein Neighboring gene Protein kinase superfamily protein Neighboring gene EXORDIUM like 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts. Brehme N, et al. Mitochondrion, 2020 Jul. PMID 32439621
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
      Title: MEF46 and MEF47 are novel specificity factors for RNA editing sites in mitochondrial nad transcripts.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318238.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 43742 Blast hits to 13561 proteins in 221 species: Archae - 0; Bacteria - 12; Metazoa - 58; Fungi - 78; Plants - 42944; Viruses - 0; Other Eukaryotes - 650 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7485398..7487608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335543.1 → NP_001318238.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IMG8, Q9SII7
      UniProtKB/TrEMBL
      A0A5S9WYN1, A0A654ETK9, A0A7G2EB87
      Conserved Domains (2) summary
      PLN03077
      Location:82 → 727
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:516 → 543
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SII7.2

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