|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
82-727 |
4.78e-133 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 414.25 E-value: 4.78e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 82 VSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSL 161
Cdd:PLN03077 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 162 --WFDGEKIHGYVIRSGFCGISSVQNSILCMYAD-SDSLSARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMV 238
Cdd:PLN03077 201 pdLARGREVHAHVVRFGFELDVDVVNALITMYVKcGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 239 hEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDlADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWN 318
Cdd:PLN03077 281 -ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 319 SILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCS 398
Cdd:PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 399 LVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDT--PNAITVISLLNACSVSADLRTSKWAHGIAIRR 476
Cdd:PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTlkPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 477 SLAINDIsVGTSIVDAYAKCGAIEMARRTFDqITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAAL 556
Cdd:PLN03077 519 GIGFDGF-LPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 557 SACNHGGLVKKGLMIFKSMVEEDH-KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPedVKAGASAWGAILSGCrnRFKKL 635
Cdd:PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSiTPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNAC--RIHRH 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 636 IITSEVVAE-VLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSE 714
Cdd:PLN03077 673 VELGELAAQhIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE 752
|
650
....*....|...
gi 1063699200 715 LNDVVQSLHRCMK 727
Cdd:PLN03077 753 INTVLEGFYEKMK 765
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
249-727 |
5.62e-81 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 272.51 E-value: 5.62e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 249 TVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLaDVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQ 328
Cdd:PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 329 RYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLD 408
Cdd:PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 409 SMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDTPNAI---TVISLLNACSVSADLRTSKWAHGIAIRRSLAInDISV 485
Cdd:PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIdqfTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVA 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 486 GTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLV 565
Cdd:PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 566 KKGLMIFKSMvEEDH--KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPedVKAGASAWGAILSGCrnRFKKLIITSEVVA 643
Cdd:PLN03081 443 EQGWEIFQSM-SENHriKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTAC--RIHKNLELGRLAA 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 644 E-VLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLsqsDSELNDVVQSL 722
Cdd:PLN03081 518 EkLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL---HPQSREIYQKL 594
|
....*
gi 1063699200 723 HRCMK 727
Cdd:PLN03081 595 DELMK 599
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
318-636 |
8.55e-35 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 141.91 E-value: 8.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 318 NSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCK------------------------------------- 360
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEwkraveegsrvcsralsshpslgvrlgnamlsmfvrf 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 361 --------------------------------FFEQPL------------------PC--------------KSIHGVII 376
Cdd:PLN03077 135 gelvhawyvfgkmperdlfswnvlvggyakagYFDEALclyhrmlwagvrpdvytfPCvlrtcggipdlargREVHAHVV 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 377 RRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD---TPNAITVISL 453
Cdd:PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRElsvDPDLMTITSV 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 454 LNACSVSADLRTSKWAHGIAIRRSLAInDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKA 533
Cdd:PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 534 LALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPE- 612
Cdd:PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEk 453
|
410 420
....*....|....*....|....*..
gi 1063699200 613 DVkagaSAWGAILSGCR--NR-FKKLI 636
Cdd:PLN03077 454 DV----ISWTSIIAGLRlnNRcFEALI 476
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
47-469 |
1.70e-21 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 99.56 E-value: 1.70e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 47 PFVFPIVFKACAKLSWLFQGRCIQASLLKRGF--ESFVSVGnsIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLL 124
Cdd:PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVvgDTFVSCA--LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 125 DYGFEEEGlwwfsklrvwgfepntstlvlvihacrslwfdgekihgyvirsgfcgissvqnsiLCMYAdsdslsarklfd 204
Cdd:PLN03081 302 LHGYSEEA-------------------------------------------------------LCLYY------------ 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 205 EMSERDViswsvvirsyvqskepvvglklfkemvheaktEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLaDVF 284
Cdd:PLN03081 315 EMRDSGV--------------------------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIV 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 285 VCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFfeq 364
Cdd:PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY--- 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 365 plpcksihGVIIRRGYESNEvalsslidaytscSLVDDAGTVLDSMTYkdvvSCstMISGLAHAGRSDEAISIfchMRDT 444
Cdd:PLN03081 439 --------SGLSEQGWEIFQ-------------SMSENHRIKPRAMHY----AC--MIELLGREGLLDEAYAM---IRRA 488
|
410 420
....*....|....*....|....*...
gi 1063699200 445 PNAITV---ISLLNACSVSADLRTSKWA 469
Cdd:PLN03081 489 PFKPTVnmwAALLTACRIHKNLELGRLA 516
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
408-627 |
4.97e-16 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 82.23 E-value: 4.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 408 DSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD----TPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAInDI 483
Cdd:PLN03081 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAgcpfTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQ 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 484 SVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGG 563
Cdd:PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1063699200 564 LVKKG----LMIFKSMVEEDhkpslQHYSC-IVDMLSRAGEIDTAVELIKNLPEdvkAGASAWGAILSG 627
Cdd:PLN03081 239 SARAGqqlhCCVLKTGVVGD-----TFVSCaLIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAG 299
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
13-159 |
4.43e-13 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 72.60 E-value: 4.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 13 ALSSKIKQASVSGKWREVVSGYSEIQRAGVQFnDPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVSVGNSIADFY 92
Cdd:PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063699200 93 MKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACR 159
Cdd:PLN03081 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
237-606 |
3.33e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 70.29 E-value: 3.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 237 MVHEAKTEPDCVTVTSVLKACTV-------------MEDIDVGRSVHGFSirrgfdladvfvcnSLIDMYSKGFDVDSAF 303
Cdd:PLN03218 462 LVQEAGLKADCKLYTTLISTCAKsgkvdamfevfheMVNAGVEANVHTFG--------------ALIDGCARAGQVAKAF 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 304 RVFDETTCRNI----VSWNSILAGFVHNQRYDEALEMFHLMVQEA--VEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIir 377
Cdd:PLN03218 528 GAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMI-- 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 378 rgYESNevaLSSLIDAYT----SCSLVDD---AGTVLDSMTYKDV----VSCSTMISGLAHAGRSDEAISIFCHMRDT-- 444
Cdd:PLN03218 606 --HEYN---IKGTPEVYTiavnSCSQKGDwdfALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQgi 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 445 -PNAITVISLLNACSVSADlrtskWAHGIAIrrslaindisvgtsivdaYAKCGAIEMaRRTfdqiteknIISWTVIISA 523
Cdd:PLN03218 681 kLGTVSYSSLMGACSNAKN-----WKKALEL------------------YEDIKSIKL-RPT--------VSTMNALITA 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 524 YAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRagEIDTA 603
Cdd:PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806
|
...
gi 1063699200 604 VEL 606
Cdd:PLN03218 807 CAL 809
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
244-610 |
1.26e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 68.36 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 244 EPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDlADVFVCNSLIDMYSKGFDVDSAFrvfdettcrnivswnsilag 323
Cdd:PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMF-------------------- 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 324 fvhnqrydealEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDA 403
Cdd:PLN03218 493 -----------EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 404 GTVLDSMTYK------DVVSCSTMISGLAHAGRSDEAISIFCHMRD-----TPNAITVIslLNACSVSADLrtskwahgi 472
Cdd:PLN03218 562 FDVLAEMKAEthpidpDHITVGALMKACANAGQVDRAKEVYQMIHEynikgTPEVYTIA--VNSCSQKGDW--------- 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 473 airrslaindisvgtsivdayakcgaiEMARRTFDQITEKNIISWTVIISA------YAinGLPDKALALFDEMKQKGYT 546
Cdd:PLN03218 631 ---------------------------DFALSIYDDMKKKGVKPDEVFFSAlvdvagHA--GDLDKAFEILQDARKQGIK 681
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063699200 547 PNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGEIDTAVELIKNL 610
Cdd:PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
512-559 |
3.13e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 58.91 E-value: 3.13e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063699200 512 KNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSAC 559
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
378-616 |
1.11e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 65.28 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 378 RGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYK----DVVSCSTMISGLAHAGRSDEAISIFCHMRDT---PNAITV 450
Cdd:PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgveaNVHTFGALIDGCARAGQVAKAFGAYGIMRSKnvkPDRVVF 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 451 ISLLNACS----------VSADLRTSkwAHGIAIrrslaiNDISVGtSIVDAYAKCGAIEMARRTFDQITEKNIIS---- 516
Cdd:PLN03218 546 NALISACGqsgavdrafdVLAEMKAE--THPIDP------DHITVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGtpev 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 517 WTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSR 596
Cdd:PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
|
250 260
....*....|....*....|
gi 1063699200 597 AGEIDTAVELIknlpEDVKA 616
Cdd:PLN03218 697 AKNWKKALELY----EDIKS 712
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
312-359 |
6.27e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 49.28 E-value: 6.27e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063699200 312 RNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVC 359
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
500-559 |
8.90e-07 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 46.58 E-value: 8.90e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 500 EMARRTFdqitEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSAC 559
Cdd:pfam13812 5 EMVRDGI----QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
413-457 |
1.03e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 45.82 E-value: 1.03e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063699200 413 KDVVSCSTMISGLAHAGRSDEAISIFCHMRD---TPNAITVISLLNAC 457
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKrgvKPNVYTYTILINGL 48
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
515-544 |
1.26e-06 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 45.15 E-value: 1.26e-06
10 20 30
....*....|....*....|....*....|
gi 1063699200 515 ISWTVIISAYAINGLPDKALALFDEMKQKG 544
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
435-628 |
1.58e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 51.80 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 435 ISIFCHMRDTPNAITVISLLNACSVSADLRtskwahgiairrslaindisVGTSIVDAYAKCGAIEMARRTFDQIT---- 510
Cdd:PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCK--------------------LYTTLISTCAKSGKVDAMFEVFHEMVnagv 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063699200 511 EKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDH--KPSLQHYS 588
Cdd:PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpiDPDHITVG 583
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1063699200 589 CIVDMLSRAGEIDTAVELIKNLPE-DVKAGASAWGAILSGC 628
Cdd:PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEyNIKGTPEVYTIAVNSC 624
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
515-549 |
1.37e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.44 E-value: 1.37e-05
10 20 30
....*....|....*....|....*....|....*
gi 1063699200 515 ISWTVIISAYAINGLPDKALALFDEMKQKGYTPNA 549
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
209-257 |
5.15e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.19 E-value: 5.15e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1063699200 209 RDVISWSVVIRSYVQSKEPVVGLKLFKEMVhEAKTEPDCVTVTSVLKAC 257
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMK-KRGVKPNVYTYTILINGL 48
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
536-593 |
9.33e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 40.80 E-value: 9.33e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1063699200 536 LFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDM 593
Cdd:pfam13812 2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGV 59
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
315-349 |
2.58e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 38.59 E-value: 2.58e-04
10 20 30
....*....|....*....|....*....|....*
gi 1063699200 315 VSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDE 349
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
416-443 |
1.01e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 1.01e-03
10 20
....*....|....*....|....*...
gi 1063699200 416 VSCSTMISGLAHAGRSDEAISIFCHMRD 443
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
282-326 |
1.19e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 37.34 E-value: 1.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1063699200 282 DVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNI----VSWNSILAGFVH 326
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVkpnvYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
416-443 |
1.30e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.67 E-value: 1.30e-03
10 20
....*....|....*....|....*...
gi 1063699200 416 VSCSTMISGLAHAGRSDEAISIFCHMRD 443
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKE 28
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
315-343 |
1.63e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 36.29 E-value: 1.63e-03
10 20
....*....|....*....|....*....
gi 1063699200 315 VSWNSILAGFVHNQRYDEALEMFHLMVQE 343
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
643-693 |
3.59e-03 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 36.37 E-value: 3.59e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1063699200 643 AEVLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMV 693
Cdd:pfam20431 12 NILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
513-541 |
6.42e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 34.63 E-value: 6.42e-03
10 20
....*....|....*....|....*....
gi 1063699200 513 NIISWTVIISAYAINGLPDKALALFDEMK 541
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| |
