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    transcription factor, putative (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834278, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor, putative (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT5G42690
    Locus tag
    AT5G42690
    See related
    Araport:AT5G42690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJB21.6; MJB21_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (17116376..17119892, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085225.2
    NM_001085226.1
    NM_001344457.1
    NM_001344458.1
    NM_123633.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor, putative (Protein of unknown function, DUF547)
    NP_001078694.1
    • Protein of unknown function, DUF547; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 821 Blast hits to 802 proteins in 158 species: Archae - 4; Bacteria - 211; Metazoa - 31; Fungi - 2; Plants - 490; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    NP_001078695.1
    • Protein of unknown function, DUF547; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 830 Blast hits to 816 proteins in 172 species: Archae - 4; Bacteria - 246; Metazoa - 31; Fungi - 0; Plants - 470; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
    NP_199083.2
    • Protein of unknown function, DUF547; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 811 Blast hits to 793 proteins in 155 species: Archae - 4; Bacteria - 209; Metazoa - 31; Fungi - 2; Plants - 489; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17116376..17119892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001085225.2 → NP_001078694.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078694.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q45GG2, Q5BPH9
      Conserved Domains (2) summary
      pfam04784
      Location:333 → 461
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:48 → 129
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. NM_001344457.1 → NP_001331168.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q45GG2, Q5BPH9

    3. NM_123633.3 → NP_199083.2  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199083.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K318, Q5BPH9
      Conserved Domains (2) summary
      pfam04784
      Location:332 → 460
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:48 → 129
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    4. NM_001085226.1 → NP_001078695.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078695.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FFA9, Q45GG0
      Conserved Domains (2) summary
      pfam04784
      Location:281 → 409
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:7 → 77
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    5. NM_001344458.1 → NP_001331167.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD16, Q9FMZ5
    Nucleotide Protein
    Heading Accession and Version

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