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Arabidopsis thaliana transcription factor, putative (Protein of unknown function, DUF547) (AT5G42690), mRNA

NCBI Reference Sequence: NM_001085225.2

FASTA Graphics 

LOCUS       NM_001085225            2208 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana transcription factor, putative (Protein of
            unknown function, DUF547) (AT5G42690), mRNA.
ACCESSION   NM_001085225
VERSION     NM_001085225.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 2208)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2208)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2208)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_001085225.1.
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..2208
                     /locus_tag="AT5G42690"
                     /gene_synonym="MJB21.6; MJB21_6"
                     /db_xref="Araport:AT5G42690"
                     /db_xref="GeneID:834278"
                     /db_xref="TAIR:AT5G42690"
     CDS             332..1954
                     /locus_tag="AT5G42690"
                     /gene_synonym="MJB21.6; MJB21_6"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG476451.1,INSD:EG476450.1,INSD:EG476444.1,
                     INSD:EG476434.1,INSD:EG476430.1,INSD:EG476471.1,
                     INSD:EL183353.1,INSD:EG476447.1,INSD:ES093773.1,
                     INSD:EG476468.1,INSD:EG476454.1,INSD:EG476449.1,
                     INSD:EG476436.1,INSD:EG476433.1,INSD:EG476437.1,
                     INSD:EG476443.1,INSD:EG476435.1,INSD:EG476440.1,
                     INSD:EG476445.1,INSD:EG476438.1,INSD:EG476466.1"
                     /inference="similar to RNA sequence, mRNA:INSD:DQ132740.1"
                     /note="Protein of unknown function, DUF547; LOCATED IN:
                     chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
                     DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
                     Protein of unknown function DUF547 (InterPro:IPR006869);
                     BEST Arabidopsis thaliana protein match is: Protein of
                     unknown function, DUF547 (TAIR:AT4G37080.3); Has 821 Blast
                     hits to 802 proteins in 158 species: Archae - 4; Bacteria
                     - 211; Metazoa - 31; Fungi - 2; Plants - 490; Viruses - 0;
                     Other Eukaryotes - 83 (source: NCBI BLink)."
                     /codon_start=1
                     /product="transcription factor, putative (Protein of
                     unknown function, DUF547)"
                     /protein_id="NP_001078694.1"
                     /db_xref="GeneID:834278"
                     /db_xref="TAIR:AT5G42690"
                     /db_xref="Araport:AT5G42690"
                     /translation="MMMSSSSSSSNGSSSYTRCVKTPSSTNTNIGKKLKGCENGVVNR
                     KALNREKIITLQEDVEKLRKKLRLEENIHRAMERAFSRPLGALPRLPPFLPPSVLELL
                     AEVAVLEEELVRLEEHIVHCRQELYQEAVFTSSSIENLKCSPAFPKHWQTKSKSASTS
                     ARESESPLSRAPCSVSVCRKGKENKLSATSIKTPMKKTTIAHTQLNKSLEAQKLKQDS
                     HRCRKTNAERSSHGGGDEPNKISEDLVKCLSNIFMRMSSIKRSMVTKSQENDKDTAFR
                     DPYGICSSFRRRDIGRYKNFSDVEEASLNQNRTSSSSLFLIRQLKRLLGRLSLVNMQK
                     LNQQEKLAFWINIYNSCMMNGFLEHGIPESPDMVTLMQKATINVGGHFLNAITIEHFI
                     LRLPHHSKYISPKGSKKNEMAVRSKFGLELSEPLVTFALSCGSWSSPAVRVYTASKVE
                     EELEVAKREYLEASVGISVVKIGIPKLMDWYSHDFAKDIESLLDWIFLQLPTELGKDA
                     LNCVEQGMSQSPSSTLVHIIPYDFTFRYLFSI"
ORIGIN      
        1 cgaccgtttc accgctcctt ttgatatccc tcacttattt ttattttttg ctctaatgaa
       61 tacacaaaac aaatcaagga aaaaaaaaaa actcaccgaa gctgaagacg aaacatcacc
      121 aaatcttcct cttctgcaac tgtctccatc tatacgtact aaattattca tttctctcta
      181 catatataat attacaaaga aagtgattca acattacaca tgtacctttc tgtaatttca
      241 aactttcaag aatgatcacc atggttgatg acacaagatc actgatccaa accagttttg
      301 tattatacag cttttgattc ggaagacaat tatgatgatg agtagcagca gtagcagtag
      361 taatggtagt agtagttata caagatgcgt taaaactcca tcatctacaa atactaacat
      421 tgggaagaaa ctgaaaggtt gtgaaaatgg tgttgtaaat cgaaaggcgt taaatcgaga
      481 gaagataatt actctgcaag aagatgttga aaagttgaga aagaagctga gacttgaaga
      541 aaacattcac cgagcaatgg aaagagcatt tagtaggcct cttggagcac ttccccgtct
      601 tcctccgttt ctacctccat cggttttgga gttacttgcg gaagtggctg ttttggaaga
      661 ggaattggtt cggttagaag aacatattgt gcattgtaga caagaattgt atcaagaagc
      721 agtttttaca tcttcatcga tagagaattt aaaatgctct cctgcatttc ctaagcattg
      781 gcagaccaaa tccaagtcag cttccactag tgctagagaa tcagaatcac ctctttcacg
      841 ggcaccttgt tctgtttcag tgtgtaggaa gggtaaagaa aacaagttga gtgctacttc
      901 tatcaaaaca ccgatgaaga aaacgactat tgctcataca caactgaata agagtttaga
      961 agctcaaaaa ctaaagcagg atagtcatag atgtcgcaaa acaaatgcag agcggagctc
     1021 tcatggtggc ggtgatgaac caaataaaat ttccgaggat ttggttaaat gtctgtctaa
     1081 cattttcatg agaatgagct caataaagag atccatggtt acaaaatctc aagaaaacga
     1141 taaagatacg gcattcaggg atccttatgg aatttgctct agttttagaa gaagggatat
     1201 tggtcgatat aagaatttca gtgatgttga agaagcctca cttaaccaaa acagaacgtc
     1261 aagttcctct ttgtttctca tccgccaact gaaacgattg cttggaagac tttctttagt
     1321 caacatgcag aaacttaatc aacaagagaa gttagctttc tggataaaca tttataacag
     1381 ctgcatgatg aatggtttcc ttgaacatgg aataccggag agccctgata tggtgacatt
     1441 aatgcaaaag gcgactataa atgtaggagg ccactttctc aatgcaatca cgatcgaaca
     1501 cttcatcctc cgcttaccgc atcactcaaa atatatttct ccaaagggtt caaagaaaaa
     1561 tgaaatggca gtgagaagta aatttggatt ggaattgtca gagccacttg taacatttgc
     1621 tctctcatgt ggtagctggt cctcacccgc ggtacgggtg tacactgcga gtaaagtaga
     1681 ggaggagttg gaggtggcga aaagagagta cctagaagca tcggtgggga tatcggtggt
     1741 gaaaataggg ataccaaagc tgatggattg gtatagtcat gactttgcaa aggacattga
     1801 atcattgctt gattggattt tccttcagtt gcctactgag ttgggtaaag atgctctcaa
     1861 ctgtgttgaa caagggatgt ctcagtcccc ttcttctact cttgtccata ttatccctta
     1921 tgacttcact tttagatatc ttttttccat ctgaaaatgt tttttttttc ctaagggggg
     1981 ttgttttctt tcttttaatt ttttctctga ggttcaaata ggttttgttt acacttttac
     2041 atcaacagaa aaatgtagat aaataaggaa aaatcgaacc tatattgtgt tcgagttagt
     2101 ttggtgtttg ttttccaaca cacatcaatt tcaaagctga ttaggtatat ggcgagaaat
     2161 gaaaaagtat ttagataaat gattattcct agagtttgta agtaggaa
//
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Reference sequence information

  • RefSeq alternative splicing
    See 5 reference mRNA sequence splice variants for the AT5G42690 gene.
  • RefSeq protein product
    See the reference protein sequence for transcription factor, putative (Protein of unknown function, DUF547) (NP_001078694.1).

More about the AT5G42690 gene

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