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    si:ch211-285f17.1 si:ch211-285f17.1 [ Danio rerio (zebrafish) ]

    Gene ID: 562465, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-285f17.1provided by ZNC
    Official Full Name
    si:ch211-285f17.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000607-77
    See related
    Ensembl:ENSDARG00000059333 AllianceGenome:ZFIN:ZDB-GENE-000607-77
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb79g04; fj77d08; id:ibd5057; wu:fb79g04; wu:fj77d08; si:dkey-96n2.1
    Summary
    Predicted to be active in cytoplasm. Is expressed in brain; immature eye; and tail bud. Orthologous to human KIAA1217 (KIAA1217). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-285f17.1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (9304174..9596582)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (9231291..9456191)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene OTU domain-containing protein 1 Neighboring gene TGFB-induced factor homeobox 1 Neighboring gene si:dkey-96n2.3 Neighboring gene nephronophthisis 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    si:ch211-285f17.1; sickle tail protein homolog
    Names
    sickle tail-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      9304174..9596582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470277.2 → XP_021325952.1  sickle tail protein homolog isoform X5

      UniProtKB/TrEMBL
      A0A8M9P621, A0A8M9PXT9
      Conserved Domains (3) summary
      cl26091
      Location:1689 → 1857
      MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
      cl26464
      Location:355 → 643
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:223 → 296
      AIP3; Actin interacting protein 3

    2. XM_021470274.2 → XP_021325949.1  sickle tail protein homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9PM53, A0A8M9PXT9
      Conserved Domains (3) summary
      cl26091
      Location:1764 → 1932
      MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    3. XM_021470279.2 → XP_021325954.1  sickle tail protein homolog isoform X7

      UniProtKB/TrEMBL
      A0A8M9PM61, A0A8M9PXT9
      Conserved Domains (2) summary
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    4. XM_021470282.2 → XP_021325957.1  sickle tail protein homolog isoform X10

      UniProtKB/TrEMBL
      A0A8M9P625, A0A8M9PXU4
      Related
      ENSDARP00000076857.5, ENSDART00000082422.6
      Conserved Domains (2) summary
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    5. XM_021470283.2 → XP_021325958.1  sickle tail protein homolog isoform X11

      UniProtKB/TrEMBL
      A0A8M9PGA9, A0A8M9PXU4
      Conserved Domains (2) summary
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    6. XM_021470275.2 → XP_021325950.1  sickle tail protein homolog isoform X4

      UniProtKB/TrEMBL
      A0A8M9PXT3, A0A8M9PXT9
      Conserved Domains (2) summary
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    7. XM_021470284.2 → XP_021325959.1  sickle tail protein homolog isoform X12

      UniProtKB/TrEMBL
      A0A8M9PM64, A0A8M9PXU4
      Conserved Domains (2) summary
      cl26464
      Location:430 → 718
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    8. XM_021470276.2 → XP_021325951.1  sickle tail protein homolog isoform X3

      UniProtKB/TrEMBL
      A0A8M9PUB4, A0A8M9PXT9
      Conserved Domains (3) summary
      cl26091
      Location:1729 → 1897
      MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
      cl26464
      Location:418 → 682
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:298 → 371
      AIP3; Actin interacting protein 3

    9. XM_005162585.5 → XP_005162642.1  sickle tail protein homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M2B9S0, A0A8M9PXT9
      Conserved Domains (2) summary
      smart00806
      Location:612 → 918
      AIP3; Actin interacting protein 3
      pfam03915
      Location:269 → 342
      AIP3; Actin interacting protein 3

    10. XM_021470281.2 → XP_021325956.1  sickle tail protein homolog isoform X8

      UniProtKB/TrEMBL
      A0A8M9PUC0, A0A8M9PXT9
      Conserved Domains (3) summary
      cl26091
      Location:1605 → 1773
      MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
      cl26464
      Location:271 → 559
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:139 → 212
      AIP3; Actin interacting protein 3

    11. XM_021470278.2 → XP_021325953.1  sickle tail protein homolog isoform X6

      UniProtKB/TrEMBL
      A0A8M9PGA5, A0A8M9PXT9
      Conserved Domains (3) summary
      cl26091
      Location:1680 → 1848
      MotB_plug; Membrane MotB of proton-channel complex MotA/MotB
      cl26464
      Location:346 → 634
      Atrophin-1; Atrophin-1 family
      cl27222
      Location:214 → 287
      AIP3; Actin interacting protein 3

    12. XM_005162591.5 → XP_005162648.1  sickle tail protein homolog isoform X9

      UniProtKB/TrEMBL
      A0A8M2B9H3, A0A8N7UV88
      Conserved Domains (2) summary
      smart00806
      Location:381 → 687
      AIP3; Actin interacting protein 3
      pfam03915
      Location:38 → 111
      AIP3; Actin interacting protein 3
    Nucleotide Protein Strain
    Heading Accession and Version

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