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    Y34D9A.7 PSP domain-containing protein;PSP proline-rich domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189588, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y34D9A.7
    Official Full Name
    PSP domain-containing protein;PSP proline-rich domain-containing protein
    Primary source
    WormBase:WBGene00021332
    Locus tag
    CELE_Y34D9A.7
    See related
    AllianceGenome:WB:WBGene00021332
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in RNA processing. Predicted to be part of catalytic step 2 spliceosome. Orthologous to human ZCCHC8 (zinc finger CCHC-type containing 8). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y34D9A.7 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (1041472..1049600)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein regulator of cytokinesis 1 Neighboring gene MIF4G domain-containing protein;THO complex subunit 2;TPR_REGION domain-containing protein;Uncharacterized protein Neighboring gene Glutaredoxin-1 Neighboring gene Conserved plasma membrane protein;Low-density lipoprotein receptor domain class A;Transmembrane protein Neighboring gene vesicle-fusing ATPase Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    PSP domain-containing protein;PSP proline-rich domain-containing protein
    NP_001293258.1
    • Confirmed by transcript evidence
    NP_001293259.1
    • Confirmed by transcript evidence
    NP_490811.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      1041472..1049600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058410.6 → NP_490811.3  PSP proline-rich domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490811.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N457
      Conserved Domains (1) summary
      smart00581
      Location:138 → 195
      PSP; proline-rich domain in spliceosome associated proteins

    2. NM_001306329.1 → NP_001293258.1  PSP proline-rich domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293258.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CM00
      Conserved Domains (1) summary
      cl02643
      Location:23 → 80
      PSP

    3. NM_001306330.1 → NP_001293259.1  PSP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293259.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CLZ7
    Nucleotide Protein
    Heading Accession and Version

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