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Conserved domains on  [gi|808354719|ref|NP_001293258|]
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PSP proline-rich domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSP super family cl02643
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 23-80 7.59e-21

PSP; Proline rich domain found in numerous spliceosome associated proteins.


The actual alignment was detected with superfamily member smart00581:

Pssm-ID: 470641  Cd Length: 54  Bit Score: 83.56  E-value: 7.59e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 808354719    23 EAKFKPGRLSQNLRKALSLGPDDIPEWVYRMRRLgfyrGYPPGYLRKSLKREFATLKI 80
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRL----GYPPGYPRLKIPGLNAPIPL 54
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
23-80 7.59e-21

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 83.56  E-value: 7.59e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 808354719    23 EAKFKPGRLSQNLRKALSLGPDDIPEWVYRMRRLgfyrGYPPGYLRKSLKREFATLKI 80
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRL----GYPPGYPRLKIPGLNAPIPL 54
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 27-66 4.01e-15

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 67.85  E-value: 4.01e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 808354719   27 KPGRLSQNLRKALSLGPDDIPEWVYRMRRLgfyrGYPPGY 66
Cdd:pfam04046   1 KPGKLSDELREALGLPEGQPPPWLYRMQRL----GPPPSY 36
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
23-63 7.71e-04

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 40.74  E-value: 7.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 808354719  23 EAKFKPGRLSQNLRKALSLGPDDIPEWVYRMRRLGFYRGYP 63
Cdd:COG5182  275 VKKKRPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSYP 315
 
Name Accession Description Interval E-value
PSP smart00581
proline-rich domain in spliceosome associated proteins;
23-80 7.59e-21

proline-rich domain in spliceosome associated proteins;


Pssm-ID: 128850  Cd Length: 54  Bit Score: 83.56  E-value: 7.59e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 808354719    23 EAKFKPGRLSQNLRKALSLGPDDIPEWVYRMRRLgfyrGYPPGYLRKSLKREFATLKI 80
Cdd:smart00581   1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRL----GYPPGYPRLKIPGLNAPIPL 54
PSP pfam04046
PSP; Proline rich domain found in numerous spliceosome associated proteins.
 27-66 4.01e-15

PSP; Proline rich domain found in numerous spliceosome associated proteins.


Pssm-ID: 461145  Cd Length: 46  Bit Score: 67.85  E-value: 4.01e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 808354719   27 KPGRLSQNLRKALSLGPDDIPEWVYRMRRLgfyrGYPPGY 66
Cdd:pfam04046   1 KPGKLSDELREALGLPEGQPPPWLYRMQRL----GPPPSY 36
CUS1 COG5182
Splicing factor 3b, subunit 2 [RNA processing and modification];
23-63 7.71e-04

Splicing factor 3b, subunit 2 [RNA processing and modification];


Pssm-ID: 227509 [Multi-domain]  Cd Length: 429  Bit Score: 40.74  E-value: 7.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 808354719  23 EAKFKPGRLSQNLRKALSLGPDDIPEWVYRMRRLGFYRGYP 63
Cdd:COG5182  275 VKKKRPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSYP 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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