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    lratd2a LRAT domain containing 2a [ Danio rerio (zebrafish) ]

    Gene ID: 767732, updated on 9-Dec-2024

    Summary

    Official Symbol
    lratd2aprovided by ZNC
    Official Full Name
    LRAT domain containing 2aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-1130
    See related
    Ensembl:ENSDARG00000032859 AllianceGenome:ZFIN:ZDB-GENE-060929-1130
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam84b; lratd2; zgc:153371; si:dkey-5e12.3
    Summary
    Is expressed in dorsal habenular nucleus and ventral habenular nucleus. Orthologous to human LRATD2 (LRAT domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See lratd2a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (33139168..33140685)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (33552048..33553565)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 38a Neighboring gene family with sequence similarity 91 member A1 Neighboring gene tribbles pseudokinase 1 Neighboring gene CBY1 interacting BAR domain containing 1

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC153371, MGC198330, MGC198332

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein LRATD2a
    Names
    LRAT domain containing 2
    family with sequence similarity 84, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044880.2NP_001038345.1  protein LRATD2a

      See identical proteins and their annotated locations for NP_001038345.1

      Status: VALIDATED

      Source sequence(s)
      BX004966
      UniProtKB/TrEMBL
      A0A2R8QRL9, Q1LYM4
      Related
      ENSDARP00000043038.5, ENSDART00000043039.7
      Conserved Domains (1) summary
      cl21534
      Location:116198
      NLPC_P60; NlpC/P60 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      33139168..33140685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395056.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      282626..284143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)