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Conserved domains on  [gi|113678243|ref|NP_001038345|]
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protein LRATD2a [Danio rerio]

Protein Classification

C40 family peptidase( domain architecture ID 229557)

C40 family peptidase is a cell-wall hydrolase that cleaves peptide cross-bridges between glycan chains and is essential for bacterial growth and viability; typically cleaves the linkage between D-Glu and diaminopimelic acid (or Lys) within peptidoglycan stem peptides; contains a Cys-His-His catalytic triad

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NLPC_P60 super family cl21534
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 116-198 4.76e-12

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


The actual alignment was detected with superfamily member pfam04970:

Pssm-ID: 473902  Cd Length: 106  Bit Score: 61.16  E-value: 4.76e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113678243  116 FPHWAVYVGDFQVVHL---HRAEVKNSFLTDASQGRRGRV---------------VNELY--KFKALCPDMVVQNAMEQV 175
Cdd:pfam04970   3 YTHHGIYVGDGYVVHLapdSEKVVSNSRSILGVLSNKAGVrkstledfaggdkyrVNNKDddKYEPLPPDEVIQRAEELV 82

                          90       100
                  ....*....|....*....|...
gi 113678243  176 GAKDRELSWRNSECFAAWCKFGK 198
Cdd:pfam04970  83 GFVPYSLLSNNCEHFVTYCRYGL 105
 
Name Accession Description Interval E-value
LRAT pfam04970
Lecithin retinol acyltransferase; The full-length members of this family, eg Swiss:P53816, are ...
 116-198 4.76e-12

Lecithin retinol acyltransferase; The full-length members of this family, eg Swiss:P53816, are representatives of a novel class II tumour-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localization, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester.


Pssm-ID: 398571  Cd Length: 106  Bit Score: 61.16  E-value: 4.76e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113678243  116 FPHWAVYVGDFQVVHL---HRAEVKNSFLTDASQGRRGRV---------------VNELY--KFKALCPDMVVQNAMEQV 175
Cdd:pfam04970   3 YTHHGIYVGDGYVVHLapdSEKVVSNSRSILGVLSNKAGVrkstledfaggdkyrVNNKDddKYEPLPPDEVIQRAEELV 82

                          90       100
                  ....*....|....*....|...
gi 113678243  176 GAKDRELSWRNSECFAAWCKFGK 198
Cdd:pfam04970  83 GFVPYSLLSNNCEHFVTYCRYGL 105
 
Name Accession Description Interval E-value
LRAT pfam04970
Lecithin retinol acyltransferase; The full-length members of this family, eg Swiss:P53816, are ...
 116-198 4.76e-12

Lecithin retinol acyltransferase; The full-length members of this family, eg Swiss:P53816, are representatives of a novel class II tumour-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localization, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester.


Pssm-ID: 398571  Cd Length: 106  Bit Score: 61.16  E-value: 4.76e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113678243  116 FPHWAVYVGDFQVVHL---HRAEVKNSFLTDASQGRRGRV---------------VNELY--KFKALCPDMVVQNAMEQV 175
Cdd:pfam04970   3 YTHHGIYVGDGYVVHLapdSEKVVSNSRSILGVLSNKAGVrkstledfaggdkyrVNNKDddKYEPLPPDEVIQRAEELV 82

                          90       100
                  ....*....|....*....|...
gi 113678243  176 GAKDRELSWRNSECFAAWCKFGK 198
Cdd:pfam04970  83 GFVPYSLLSNNCEHFVTYCRYGL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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