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    si:dkey-226l10.6 si:dkey-226l10.6 [ Danio rerio (zebrafish) ]

    Gene ID: 558387, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-226l10.6provided by ZNC
    Official Full Name
    si:dkey-226l10.6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1550
    See related
    Ensembl:ENSDARG00000087483 AllianceGenome:ZFIN:ZDB-GENE-030131-1550
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb74d07; wu:fb74d07
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-226l10.6 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (24170912..24177641)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (24025647..24031240)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene MAP7 domain containing 2b Neighboring gene eukaryotic translation initiation factor 1A X-linked b Neighboring gene ribosomal protein S6 kinase, polypeptide 3b Neighboring gene uncharacterized LOC137489245 Neighboring gene pyruvate dehydrogenase E1 subunit alpha 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 684

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      24170912..24177641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_681589.9 → XP_686681.1  zinc finger protein 684

      UniProtKB/TrEMBL
      A0A8N7UQS9, E7F1W7
      Related
      ENSDARP00000109040.2, ENSDART00000127842.3
      Conserved Domains (2) summary
      sd00017
      Location:229 → 249
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05485
      Location:4 → 87
      THAP; THAP domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395176.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      208732..215467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473788.2 → XP_021329463.1  zinc finger protein 684

      UniProtKB/TrEMBL
      A0A8M9PR20
      Conserved Domains (3) summary
      PHA00733
      Location:257 → 309
      PHA00733; hypothetical protein
      sd00017
      Location:229 → 249
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05485
      Location:5 → 86
      THAP; THAP domain

    RNA

    1. XR_011010484.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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