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    nap1l4b nucleosome assembly protein 1-like 4b [ Danio rerio (zebrafish) ]

    Gene ID: 492812, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nap1l4bprovided by ZNC
    Official Full Name
    nucleosome assembly protein 1-like 4bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041114-168
    See related
    Ensembl:ENSDARG00000068868 AllianceGenome:ZFIN:ZDB-GENE-041114-168
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:101613
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human NAP1L4 (nucleosome assembly protein 1 like 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nap1l4b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (31776088..31794831, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (31504905..31523738, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene immunoglobulin superfamily, DCC subclass, member 4 Neighboring gene uncharacterized LOC137496176 Neighboring gene cysteinyl-tRNA synthetase 1 Neighboring gene myosin binding protein C3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Expression of nucleosome assembly protein 1 like genes in zebrafish embryos. Sun S, et al. Gene Expr Patterns, 2020 Jan. PMID 31669493
    2. Comparative genomic analysis of teleost fish bmal genes. Wang H. Genetica, 2009 May. PMID 18850331
    3. Knockdown screening of chromatin binding and regulatory proteins in zebrafish identified Suz12b as a regulator of tfpia and an antithrombotic drug target. Raman R, et al. Sci Rep, 2021 Jul 27. PMID 34315984, Free PMC Article
    4. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleosome assembly protein 1-like 4b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007453.1 → NP_001007454.1  nucleosome assembly protein 1-like 4b

      See identical proteins and their annotated locations for NP_001007454.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085386
      UniProtKB/TrEMBL
      Q5U3U9
      Related
      ENSDARP00000090521.3, ENSDART00000099748.6
      Conserved Domains (2) summary
      cl14654
      Location:19 → 134
      V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
      pfam00956
      Location:48 → 318
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      31776088..31794831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477517.2 → XP_021333192.1  nucleosome assembly protein 1-like 4b isoform X4

      UniProtKB/TrEMBL
      A0A8M9PNW3
      Conserved Domains (1) summary
      pfam00956
      Location:33 → 303
      NAP; Nucleosome assembly protein (NAP)

    2. XM_068222286.1 → XP_068078387.1  nucleosome assembly protein 1-like 4b isoform X5

    3. XM_009303210.4 → XP_009301485.1  nucleosome assembly protein 1-like 4b isoform X2

      UniProtKB/TrEMBL
      A0A8M3B448
      Conserved Domains (1) summary
      pfam00956
      Location:48 → 318
      NAP; Nucleosome assembly protein (NAP)

    4. XM_068222284.1 → XP_068078385.1  nucleosome assembly protein 1-like 4b isoform X1

    5. XM_068222285.1 → XP_068078386.1  nucleosome assembly protein 1-like 4b isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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