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Conserved domains on  [gi|688564254|ref|XP_009301485|]
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nucleosome assembly protein 1-like 4b isoform X2 [Danio rerio]

Protein Classification

NAP domain-containing protein( domain architecture ID 10469758)

NAP domain-containing protein similar to Saccharomyces cerevisiae nucleosome assembly protein (NAP) and Homo sapiens protein SET

CATH:  3.30.1120.90
Gene Ontology:  GO:0042393|GO:0003682|GO:0006334
SCOP:  4003454

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
48-319 9.92e-85

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


:

Pssm-ID: 460010  Cd Length: 203  Bit Score: 255.17  E-value: 9.92e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254   48 RRVNALRNLQVNSTHIEAKFYKEVHELERKYSALYQPLFdkrrkvvsgeveptdeecewqsdhedeaalaedlkkkaaie 127
Cdd:pfam00956   1 RRVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY----------------------------------------- 39
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  128 ektedaneekpkgipefwltifRSVDMLSDMLQEHDEPILKHLHDIKVIFsgPDQPMSFTLEFHFEPNEYFTNTVLTKVY 207
Cdd:pfam00956  40 ----------------------KNLPLLSEMITERDEPALKHLKDIKIEY--PLDEPGFTLEFHFAPNPYFTNTVLTKTY 95
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  208 KMKSEPDaddpfsfeGPEIIDCEGCEIDWQKGKDVTVKTIKKKQKHKGRGTARVITKQVPNDSFFNFFNPIKVSPDKEL- 286
Cdd:pfam00956  96 YYQDEPD--------GPEIIKAEGTEIDWKEGKNVTVKTVKKKQRNKGTGQTRTVTKTVPTESFFNFFSPPEVPEDEDEd 167
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 688564254  287 ---DEDSEYTLATDFEIGHFFRERIVPRAVLYFTGE 319
Cdd:pfam00956 168 deeDEELEERLELDYEIGEDIKDKIIPRAVLYFTGE 203
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
48-319 9.92e-85

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 255.17  E-value: 9.92e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254   48 RRVNALRNLQVNSTHIEAKFYKEVHELERKYSALYQPLFdkrrkvvsgeveptdeecewqsdhedeaalaedlkkkaaie 127
Cdd:pfam00956   1 RRVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY----------------------------------------- 39
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  128 ektedaneekpkgipefwltifRSVDMLSDMLQEHDEPILKHLHDIKVIFsgPDQPMSFTLEFHFEPNEYFTNTVLTKVY 207
Cdd:pfam00956  40 ----------------------KNLPLLSEMITERDEPALKHLKDIKIEY--PLDEPGFTLEFHFAPNPYFTNTVLTKTY 95
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  208 KMKSEPDaddpfsfeGPEIIDCEGCEIDWQKGKDVTVKTIKKKQKHKGRGTARVITKQVPNDSFFNFFNPIKVSPDKEL- 286
Cdd:pfam00956  96 YYQDEPD--------GPEIIKAEGTEIDWKEGKNVTVKTVKKKQRNKGTGQTRTVTKTVPTESFFNFFSPPEVPEDEDEd 167
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 688564254  287 ---DEDSEYTLATDFEIGHFFRERIVPRAVLYFTGE 319
Cdd:pfam00956 168 deeDEELEERLELDYEIGEDIKDKIIPRAVLYFTGE 203
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
13-320 5.45e-52

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 175.37  E-value: 5.45e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  13 DQAMQNPQALAALQDKLDSVSHSASIMDSLPKSVKRRVNALRNLQVNSTHIEAKFYKEVHELERKYSALYQPLFDKRRKV 92
Cdd:PTZ00007   6 DNQPIPMEDESDIIEGLDSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  93 VSGEveptdeecewqsdhedeaalaedlkkkaaieekteDANEEKPKGIPEFWLTIFRSVDMLSDMLQEHDEPILKHLHD 172
Cdd:PTZ00007  86 LVQN-----------------------------------GGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSD 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254 173 IKVIFSGPDQPMSFTLEFHFEPNEYFTNTVLTKVYKMKSEpDADDpfsfeGPEIIDCEGCEIDWQKGKDVTVKTIKKKQK 252
Cdd:PTZ00007 131 ISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVL-DGDD-----EPLLSNTVATEIDWKQGKDVTKKVVTKKQR 204
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688564254 253 HKGRGTARVITKQVPNDSFFNFFNPIKVSPDKELDEDSEYTLA-------TDFEIGHFFRERIVPRAVLYFTGEA 320
Cdd:PTZ00007 205 HKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAelemiveTDYEIGITIRDKLIPYAVYWFLGEA 279
 
Name Accession Description Interval E-value
NAP pfam00956
Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the ...
48-319 9.92e-85

Nucleosome assembly protein (NAP); NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes.


Pssm-ID: 460010  Cd Length: 203  Bit Score: 255.17  E-value: 9.92e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254   48 RRVNALRNLQVNSTHIEAKFYKEVHELERKYSALYQPLFdkrrkvvsgeveptdeecewqsdhedeaalaedlkkkaaie 127
Cdd:pfam00956   1 RRVNALKKLQKEHEKLEAEFQEEVHELEKKYAALYQPLY----------------------------------------- 39
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  128 ektedaneekpkgipefwltifRSVDMLSDMLQEHDEPILKHLHDIKVIFsgPDQPMSFTLEFHFEPNEYFTNTVLTKVY 207
Cdd:pfam00956  40 ----------------------KNLPLLSEMITERDEPALKHLKDIKIEY--PLDEPGFTLEFHFAPNPYFTNTVLTKTY 95
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  208 KMKSEPDaddpfsfeGPEIIDCEGCEIDWQKGKDVTVKTIKKKQKHKGRGTARVITKQVPNDSFFNFFNPIKVSPDKEL- 286
Cdd:pfam00956  96 YYQDEPD--------GPEIIKAEGTEIDWKEGKNVTVKTVKKKQRNKGTGQTRTVTKTVPTESFFNFFSPPEVPEDEDEd 167
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 688564254  287 ---DEDSEYTLATDFEIGHFFRERIVPRAVLYFTGE 319
Cdd:pfam00956 168 deeDEELEERLELDYEIGEDIKDKIIPRAVLYFTGE 203
PTZ00007 PTZ00007
(NAP-L) nucleosome assembly protein -L; Provisional
13-320 5.45e-52

(NAP-L) nucleosome assembly protein -L; Provisional


Pssm-ID: 240226 [Multi-domain]  Cd Length: 337  Bit Score: 175.37  E-value: 5.45e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  13 DQAMQNPQALAALQDKLDSVSHSASIMDSLPKSVKRRVNALRNLQVNSTHIEAKFYKEVHELERKYSALYQPLFDKRRKV 92
Cdd:PTZ00007   6 DNQPIPMEDESDIIEGLDSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254  93 VSGEveptdeecewqsdhedeaalaedlkkkaaieekteDANEEKPKGIPEFWLTIFRSVDMLSDMLQEHDEPILKHLHD 172
Cdd:PTZ00007  86 LVQN-----------------------------------GGAEIGTPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSD 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688564254 173 IKVIFSGPDQPMSFTLEFHFEPNEYFTNTVLTKVYKMKSEpDADDpfsfeGPEIIDCEGCEIDWQKGKDVTVKTIKKKQK 252
Cdd:PTZ00007 131 ISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVL-DGDD-----EPLLSNTVATEIDWKQGKDVTKKVVTKKQR 204
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688564254 253 HKGRGTARVITKQVPNDSFFNFFNPIKVSPDKELDEDSEYTLA-------TDFEIGHFFRERIVPRAVLYFTGEA 320
Cdd:PTZ00007 205 HKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAelemiveTDYEIGITIRDKLIPYAVYWFLGEA 279
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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