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    Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842819, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin carboxyl-terminal hydrolase-related protein
    Primary source
    TAIR:AT1G65120
    Locus tag
    AT1G65120
    See related
    Araport:AT1G65120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K8.3; T23K8_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (24191179..24196337, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene SCR-like 2 Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_105185.3
    NM_202362.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin carboxyl-terminal hydrolase-related protein
    NP_176691.2
    • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 468 Blast hits to 425 proteins in 93 species: Archae - 0; Bacteria - 32; Metazoa - 49; Fungi - 38; Plants - 218; Viruses - 8; Other Eukaryotes - 123 (source: NCBI BLink).
    NP_974091.1
    • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24191179..24196337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202362.2 → NP_974091.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974091.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EMK6, F4I9U7
      Conserved Domains (3) summary
      pfam00443
      Location:848 → 1142
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:212 → 676
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:20 → 127
      DUF627; Protein of unknown function (DUF627)

    2. NM_105185.3 → NP_176691.2  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176691.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EMK6, F4I9U8
      Conserved Domains (3) summary
      pfam00443
      Location:848 → 1100
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:212 → 676
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:20 → 127
      DUF627; Protein of unknown function (DUF627)
    Nucleotide Protein
    Heading Accession and Version

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