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    transmembrane 50A-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840608, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane 50A-like protein
    Primary source
    TAIR:AT1G36980
    Locus tag
    AT1G36980
    See related
    Araport:AT1G36980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32E20.29; T32E20_29
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (14024634..14027040)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1985) Neighboring gene pseudo Neighboring gene C-jun-amino-terminal kinase-interacting protein Neighboring gene ncRNA Neighboring gene Beta-galactosidase related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001333186.1
    NM_103353.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane 50A-like protein
    NP_001319157.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      14024634..14027040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333186.1 → NP_001319157.1  transmembrane 50A-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Y1, A0A384KWC9, Q949Z8
      Conserved Domains (1) summary
      pfam05255
      Location:14 → 134
      UPF0220; Uncharacterized protein family (UPF0220)

    2. NM_103353.4 → NP_564477.1  transmembrane 50A-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Y1, A0A384KWC9, Q949Z8
      Conserved Domains (1) summary
      pfam05255
      Location:14 → 134
      UPF0220; Uncharacterized protein family (UPF0220)
    Nucleotide Protein
    Heading Accession and Version

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