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    Translation initiation factor eIF3 subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842921, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translation initiation factor eIF3 subunit
    Primary source
    TAIR:AT1G66070
    Locus tag
    AT1G66070
    See related
    Araport:AT1G66070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15E12.10; F15E12_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (24595774..24598631, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene hypothetical protein (DUF577) Neighboring gene hikeshi-like protein Neighboring gene Disease resistance protein (TIR-NBS class)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198397.1
    NM_105278.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Translation initiation factor eIF3 subunit
    NP_001185326.1
    • Translation initiation factor eIF3 subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: Translation initiation factor eIF3 subunit (TAIR:AT5G37475.1).
    NP_564865.1
    • Translation initiation factor eIF3 subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: Translation initiation factor eIF3 subunit (TAIR:AT5G37475.1); Has 512 Blast hits to 510 proteins in 194 species: Archae - 2; Bacteria - 36; Metazoa - 190; Fungi - 147; Plants - 83; Viruses - 1; Other Eukaryotes - 53 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24595774..24598631 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198397.1 → NP_001185326.1  Translation initiation factor eIF3 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185326.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCY1, A0A654ELS4, Q9C8D8
      Conserved Domains (1) summary
      pfam08597
      Location:1 → 185
      eIF3_subunit; Translation initiation factor eIF3 subunit

    2. NM_105278.3 → NP_564865.1  Translation initiation factor eIF3 subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564865.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCY1, A0A654ELS4, Q9C8D8
      Conserved Domains (1) summary
      pfam08597
      Location:1 → 185
      eIF3_subunit; Translation initiation factor eIF3 subunit
    Nucleotide Protein
    Heading Accession and Version

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