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    FAP1 Chalcone-flavanone isomerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825492, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FAP1
    Official Full Name
    Chalcone-flavanone isomerase family protein
    Primary source
    TAIR:AT3G63170
    Locus tag
    AT3G63170
    See related
    Araport:AT3G63170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFAP1; fatty-acid-binding protein 1
    Summary
    Encodes a plastid stroma localized fatty acid binding protein involved in fatty acid metabolism.
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    Genomic context

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    See FAP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (23334574..23336081)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MIRO-related GTP-ase 2 Neighboring gene outer envelope membrane protein Neighboring gene TIC-like protein Neighboring gene ribosome recycling factor, chloroplast precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis. Ngaki MN, et al. Nature, 2012 May 13. PMID 22622584, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_116182.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acid binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within fatty acid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Chalcone-flavanone isomerase family protein
    NP_567140.1
    • Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT2G26310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23334574..23336081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116182.5 → NP_567140.1  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567140.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1X2
      UniProtKB/TrEMBL
      A0A178V7B2, A0A5S9XNB0
      Conserved Domains (1) summary
      PLN03174
      Location:1 → 278
      PLN03174; Chalcone-flavanone isomerase-related; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1X2.1

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