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    DNA/RNA polymerases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831424, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA/RNA polymerases superfamily protein
    Primary source
    TAIR:AT5G15700
    Locus tag
    AT5G15700
    See related
    Araport:AT5G15700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14F8.80; F14F8_80
    Summary
    Nucleus encoded plastid RNA polymerase. Localized in mitochondria and chloroplast.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (5114761..5121841, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene mutator transposase MUDRA protein Neighboring gene zinc ion binding protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene GDSL-motif lipase 7 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Kühn K, et al. Plant Cell, 2009 Sep. PMID 19783760, Free PMC Article
    2. Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein. Azevedo J, et al. Proc Natl Acad Sci U S A, 2008 Jul 1. PMID 18567673, Free PMC Article
    3. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203389.1
    NM_121574.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 5'-3' RNA polymerase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA/RNA polymerases superfamily protein
    NP_001190318.1
    • DNA/RNA polymerases superfamily protein; FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion, chloroplast, thylakoid membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1).
    NP_197074.1
    • DNA/RNA polymerases superfamily protein; FUNCTIONS IN: RNA polymerase activity, DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion, chloroplast, thylakoid membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1300 Blast hits to 1280 proteins in 331 species: Archae - 0; Bacteria - 39; Metazoa - 134; Fungi - 224; Plants - 203; Viruses - 137; Other Eukaryotes - 563 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5114761..5121841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121574.3 → NP_197074.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197074.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23644, Q9LFV6
      UniProtKB/TrEMBL
      A0A178UAN7
      Conserved Domains (2) summary
      COG5108
      Location:165 → 1010
      RPO41; Mitochondrial DNA-directed RNA polymerase [Transcription]
      pfam00940
      Location:620 → 1010
      RNA_pol; DNA-dependent RNA polymerase

    2. NM_001203389.1 → NP_001190318.1  DNA/RNA polymerases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190318.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4Q7, A0A654G1D3, F4KB75
      Conserved Domains (3) summary
      PHA00452
      Location:174 → 1000
      PHA00452; T3/T7-like RNA polymerase
      pfam00940
      Location:620 → 1001
      RNA_pol; DNA-dependent RNA polymerase
      pfam14700
      Location:180 → 496
      RPOL_N; DNA-directed RNA polymerase N-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFV6.1

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