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    Ribonuclease III family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820583, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribonuclease III family protein
    Primary source
    TAIR:AT3G13740
    Locus tag
    AT3G13740
    See related
    Araport:AT3G13740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (4504067..4506320)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PRA1 (Prenylated rab acceptor) family protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 90, subfamily D, polypeptide 1 Neighboring gene ncRNA Neighboring gene beta galactosidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling. Hotto AM, et al. Plant Cell, 2015 Mar. PMID 25724636, Free PMC Article
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RNC3 and RNC4, two Arabidopsis thaliana chloroplast Mini-RNase III-like enzymes participates in rRNA maturation and intron recycling. [RNC4]
      Title: Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338069.1
    NM_001338071.1
    NM_001338072.1
    NM_001338073.1
    NM_112224.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within RNA processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within maturation of 4.5S rRNA IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within rRNA 5'-end processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribonuclease III family protein
    NP_001319543.1
    • Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT1G55140.1).
    NP_566463.1
    • Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT1G55140.1); Has 1542 Blast hits to 1541 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4504067..4506320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338070.1 → NP_001325426.1  Ribonuclease III family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LL75, A0A654F6W3
      Conserved Domains (1) summary
      cl00258
      Location:96 → 209
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...

    2. NM_112224.4 → NP_566463.1  Ribonuclease III family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566463.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9U3, A0A384LLK0, Q8LG74, Q94F12
      Conserved Domains (1) summary
      cl00258
      Location:96 → 209
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...

    3. NM_001338071.1 → NP_001325428.1  Ribonuclease III family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LL77

    4. NM_001338072.1 → NP_001325427.1  Ribonuclease III family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LL76

    5. NM_001338073.1 → NP_001325429.1  Ribonuclease III family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LL78
      Conserved Domains (1) summary
      cl00258
      Location:96 → 192
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...

    6. NM_001338069.1 → NP_001319543.1  Ribonuclease III family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JEI2
    Nucleotide Protein
    Heading Accession and Version

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