U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834400, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    APS4
    Official Full Name
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    Primary source
    TAIR:AT5G43780
    Locus tag
    AT5G43780
    See related
    Araport:AT5G43780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQD19.13; MQD19_13
    Summary
    sulfate adenylyltransferase, ATP sulfurylase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See APS4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (17589394..17591737, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene non-LTR retrolelement reverse transcriptase-like protein Neighboring gene 3-ketoacyl-CoA synthase 20 Neighboring gene proline-rich family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional characterization of a gene encoding a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Hatzfeld Y, et al. Gene, 2000 May 2. PMID 10806350
    2. Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Uno Y, et al. Proc Natl Acad Sci U S A, 2000 Oct 10. PMID 11005831, Free PMC Article
    3. Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana. Liang G, et al. Plant Signal Behav, 2010 Oct. PMID 20935495, Free PMC Article
    4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. There is reciprocal regulation between SULTR2;1 and APS genes through miR395.
      Title: Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_123745.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sulfate adenylyltransferase (ATP) activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables sulfate adenylyltransferase (ATP) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen sulfide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within sulfate assimilation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    NP_199191.1
    • APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase/archaeosine transglycosylase-like family protein (TAIR:AT4G14680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17589394..17591737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123745.6 → NP_199191.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199191.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWX9, Q9S7D8
      UniProtKB/TrEMBL
      A0A178U9N0, A0A5S9YAX1
      Conserved Domains (2) summary
      cd00517
      Location:84 → 449
      ATPS; ATP-sulfurylase
      TIGR00339
      Location:56 → 448
      sopT; ATP sulphurylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7D8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools