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    F-box associated ubiquitination effector protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820847, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box associated ubiquitination effector protein
    Primary source
    TAIR:AT3G16020
    Locus tag
    AT3G16020
    See related
    Araport:AT3G16020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (5437962..5439461)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sulfate transporter 3;4 Neighboring gene MAR binding filament-like protein 1 Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene lectin protein kinase family protein Neighboring gene Translation machinery associated TMA7 Neighboring gene ncRNA Neighboring gene pyridoxine biosynthesis 1.2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector protein
    NP_188223.1
    • F-box associated ubiquitination effector protein; FUNCTIONS IN: phospholipase C activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32140.1); Has 386 Blast hits to 373 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5437962..5439461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338199.1 → NP_001327740.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT88

    2. NM_001338198.1 → NP_001327741.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LT88

    3. NM_112472.2 → NP_188223.1  F-box associated ubiquitination effector protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188223.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F7M4, F4J1E9
      Conserved Domains (1) summary
      pfam07734
      Location:55 → 98
      FBA_1; F-box associated
    Nucleotide Protein
    Heading Accession and Version

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