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Conserved domains on  [gi|15233261|ref|NP_188223|]
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F-box associated ubiquitination effector protein [Arabidopsis thaliana]

Protein Classification

F-box protein( domain architecture ID 10543963)

F-box protein is the substrate-recognition component of a SCF(Skp1-cullin-F-box) E3 ubiquitin ligase complex that mediates the ubiquitination and subsequent proteasomal degradation of target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
55-98 4.17e-24

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


:

Pssm-ID: 254394  Cd Length: 159  Bit Score: 89.20  E-value: 4.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233261    55 DTVTLSSVREEQLEVLFQNCHTLEMEIWVTTNIEPNAMSWSKFL 98
Cdd:pfam07734  47 DTVSLSVVREEKLAVLLQEDDTSKIEIWVTTKIEPNAVSWSKFL 90
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
55-98 4.17e-24

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 89.20  E-value: 4.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233261    55 DTVTLSSVREEQLEVLFQNCHTLEMEIWVTTNIEPNAMSWSKFL 98
Cdd:pfam07734  47 DTVSLSVVREEKLAVLLQEDDTSKIEIWVTTKIEPNAVSWSKFL 90
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
55-98 4.17e-24

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 89.20  E-value: 4.17e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15233261    55 DTVTLSSVREEQLEVLFQNCHTLEMEIWVTTNIEPNAMSWSKFL 98
Cdd:pfam07734  47 DTVSLSVVREEKLAVLLQEDDTSKIEIWVTTKIEPNAVSWSKFL 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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