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    PUCHI Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831974, updated on 18-Sep-2024

    Summary

    Official Symbol
    PUCHI
    Official Full Name
    Integrase-type DNA-binding superfamily protein
    Primary source
    TAIR:AT5G18560
    Locus tag
    AT5G18560
    See related
    Araport:AT5G18560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28N17.40; T28N17_40
    Summary
    Encodes PUCHI, a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis. Expressed in early floral meristem (stage 1 to 2). Required for early floral meristem growth and for bract suppression. Triple mutant with bop1 and bop2 displays a strong defect in the determination of floral meristem identity with reduced LFY expression and the lack of AP1 expression.
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    Genomic context

    See PUCHI in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6164526..6166040, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene protein serine/threonine kinase Neighboring gene E3 ubiquitin-protein ligase Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene GTP1/OBG family protein Neighboring gene tonneau 2 (TON2) Neighboring gene ncRNA Neighboring gene ncRNA

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    Integrase-type DNA-binding superfamily protein
    NP_197357.2
    • PUCHI; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G13910.1); Has 5489 Blast hits to 5364 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 5473; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6164526..6166040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121861.3 → NP_197357.2  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197357.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6J9Q2
      UniProtKB/TrEMBL
      A0A178URC3, A0A5S9Y5A5, A0A654G2M9
      Conserved Domains (1) summary
      smart00380
      Location:54 → 117
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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