U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    NFXL1 NF-X-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837555, updated on 18-Sep-2024

    Summary

    Official Symbol
    NFXL1
    Official Full Name
    NF-X-like 1
    Primary source
    TAIR:AT1G10170
    Locus tag
    AT1G10170
    See related
    Araport:AT1G10170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNFXL1; F14N23.5; F14N23_5; NF-X-like 1
    Summary
    Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See NFXL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (3333504..3338188, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding protein Neighboring gene phloem protein 2-A10 Neighboring gene pseudo Neighboring gene LOW protein: exocyst complex component-like protein Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene GATA type zinc finger transcription factor family protein

    Bibliography

    Interactions

    General gene information

    NM_001331888.1
    NM_001331890.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    NF-X-like 1
    NP_001318968.1
    • NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3333504..3338188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331889.1 → NP_001323075.1  NF-X-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVY4, A0A5S9TKI6, A0A654E8D7
    2. NM_100891.3 → NP_172488.1  NF-X-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172488.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SY59
      UniProtKB/TrEMBL
      A0A178WL38, A0A5S9TKI6, A0A654E8D7
      Conserved Domains (4) summary
      cd06008
      Location:503 → 550
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      PRK10811
      Location:86 → 215
      rne; ribonuclease E; Reviewed
      cd16696
      Location:222 → 279
      RING-CH-C4HC3_NFX1; RING-CH finger, H2 subclass (C4HC3-type), found in transcriptional repressor NF-X1 and similar proteins
      cl00297
      Location:888 → 963
      R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
    3. NM_001331888.1 → NP_001318968.1  NF-X-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SY59
      UniProtKB/TrEMBL
      A0A178WL38, A0A5S9TKI6, A0A654E8D7
      Conserved Domains (4) summary
      cd06008
      Location:503 → 550
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      PRK10811
      Location:86 → 215
      rne; ribonuclease E; Reviewed
      cd16696
      Location:222 → 279
      RING-CH-C4HC3_NFX1; RING-CH finger, H2 subclass (C4HC3-type), found in transcriptional repressor NF-X1 and similar proteins
      cl00297
      Location:888 → 963
      R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
    4. NM_001331890.1 → NP_001323074.1  NF-X-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVZ2, A0A5S9TKI6, A0A654E8D7
    External link. Please review our privacy policy.