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    AGP11 arabinogalactan protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821093, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP11
    Official Full Name
    arabinogalactan protein 11
    Primary source
    TAIR:AT3G01700
    Locus tag
    AT3G01700
    See related
    Araport:AT3G01700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 11; ARABINOGALACTAN PROTEIN 11; ATAGP11; F4P13.24; F4P13_24
    Summary
    Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP11 function results in decreased fertility due to defects in pollen tube growth.
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    Genomic context

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    See AGP11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (258879..259631)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sieve element occlusion amino-terminus protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene tRNA-Pro Neighboring gene TPX2 (targeting protein for Xklp2) protein family Neighboring gene peptidyl serine alpha-galactosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression-based and co-localization detection of arabinogalactan protein 6 and arabinogalactan protein 11 interactors in Arabidopsis pollen and pollen tubes. Costa M, et al. BMC Plant Biol, 2013 Jan 8. PMID 23297674, Free PMC Article
    2. Early germination of Arabidopsis pollen in a double null mutant for the arabinogalactan protein genes AGP6 and AGP11. Coimbra S, et al. Sex Plant Reprod, 2010 Sep. PMID 20162305
    3. Pollen grain development is compromised in Arabidopsis agp6 agp11 null mutants. Coimbra S, et al. J Exp Bot, 2009. PMID 19433479, Free PMC Article
    4. Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis. Levitin B, et al. Plant J, 2008 Nov. PMID 18644001
    5. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The data presented suggest the involvement of AGP6 and AGP11 in multiple signaling pathways, in particular those involved in developmental processes such as endocytosis-mediated plasma membrane remodeling during Arabidopsis pollen development.
      Title: Expression-based and co-localization detection of arabinogalactan protein 6 and arabinogalactan protein 11 interactors in Arabidopsis pollen and pollen tubes.
    2. Pollen of agp6 agp11 double null mutant displayed reduced germination and elongation.
      Title: Early germination of Arabidopsis pollen in a double null mutant for the arabinogalactan protein genes AGP6 and AGP11.
    3. Agp6 and Agp11 have overlapping and important functions in gametophytic pollen grain development.
      Title: Pollen grain development is compromised in Arabidopsis agp6 agp11 null mutants.
    4. Loss of function in AGP6 and AGP11 leads to reduced fertility, inhibition of pollen tube growth and inhibition of pollen release from stamens.
      Title: Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_111036.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 11
    NP_566146.1
    • arabinogalactan protein 11 (AGP11); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 6 (TAIR:AT5G14380.1); Has 18682 Blast hits to 7914 proteins in 897 species: Archae - 47; Bacteria - 4443; Metazoa - 2565; Fungi - 1546; Plants - 1733; Viruses - 648; Other Eukaryotes - 7700 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      258879..259631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111036.3 → NP_566146.1  arabinogalactan protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566146.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FVE0, Q9S7N4
      UniProtKB/TrEMBL
      A0A178VG39, A0A5S9X8S5
      Conserved Domains (1) summary
      PRK12270
      Location:19 → 107
      kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FVE0.2

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