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Conserved domains on  [gi|18395919|ref|NP_566146|]
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arabinogalactan protein 11 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
kgd super family cl39092
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 19-107 4.76e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


The actual alignment was detected with superfamily member PRK12270:

Pssm-ID: 476867 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18395919    19 FAADAPSAAPTASPTKSPTKAPAAAPKSSAAAPKASSPVAEEPTPEDDYSAASPSDSAEAPTVSSPPAPTPEADGPSSDG 98
Cdd:PRK12270   33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

                          90
                  ....*....|....
gi 18395919    99 PSSD-----GPAAA 107
Cdd:PRK12270  113 VEDEvtplrGAAAA 126
 
Name Accession Description Interval E-value
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 19-107 4.76e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18395919    19 FAADAPSAAPTASPTKSPTKAPAAAPKSSAAAPKASSPVAEEPTPEDDYSAASPSDSAEAPTVSSPPAPTPEADGPSSDG 98
Cdd:PRK12270   33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

                          90
                  ....*....|....
gi 18395919    99 PSSD-----GPAAA 107
Cdd:PRK12270  113 VEDEvtplrGAAAA 126
 
Name Accession Description Interval E-value
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 19-107 4.76e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18395919    19 FAADAPSAAPTASPTKSPTKAPAAAPKSSAAAPKASSPVAEEPTPEDDYSAASPSDSAEAPTVSSPPAPTPEADGPSSDG 98
Cdd:PRK12270   33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

                          90
                  ....*....|....
gi 18395919    99 PSSD-----GPAAA 107
Cdd:PRK12270  113 VEDEvtplrGAAAA 126
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 22-127 4.70e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 36.02  E-value: 4.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18395919    22 DAPSAAPTASPTKSPTKAPAAapkssaaapkasspvAEEPTPEDDYSAASPSDSAEAPTVSSPPAPTPEADGPSSDGPSS 101
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAP---------------AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102

                          90       100
                  ....*....|....*....|....*.
gi 18395919   102 DGPAAAESPKSGATTNVKLSIAGTVA 127
Cdd:PRK12270  103 AAAAAPAAAAVEDEVTPLRGAAAAVA 128
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
21-115 7.56e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 35.14  E-value: 7.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18395919   21 ADAPSAAPTASPTKSPTKAPAAAPKSSAAAPKASSPVAEEPTPEDDYSAASPS--DSAEAPTVSSPPAPTPEADG----P 94
Cdd:PRK14971 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSapQSATQPAGTPPTVSVDPPAAvpvnP 439

                         90       100
                 ....*....|....*....|.
gi 18395919   95 SSDGPSSDGPAAAESPKSGAT 115
Cdd:PRK14971 440 PSTAPQAVRPAQFKEEKKIPV 460
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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