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    POD1 POLLEN DEFECTIVE IN GUIDANCE-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843124, updated on 18-Sep-2024

    Summary

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    Official Symbol
    POD1
    Official Full Name
    POLLEN DEFECTIVE IN GUIDANCE-like protein
    Primary source
    TAIR:AT1G67960
    Locus tag
    AT1G67960
    See related
    Araport:AT1G67960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    POLLEN DEFECTIVE IN GUIDANCE 1; T23K23.19; T23K23_19
    Summary
    POD1 is involved in pollen tube guidence and early embryo patterning.
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    Genomic context

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    See POD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (25480652..25484396, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene non-intrinsic ABC protein 3 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene heat shock transcription factor A8 Neighboring gene caffeoyl-CoA 3-O-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. POD1 regulates pollen tube guidance in response to micropylar female signaling and acts in early embryo patterning in Arabidopsis. Li HJ, et al. Plant Cell, 2011 Sep. PMID 21954464, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_105466.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within maintenance of protein localization in endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in endoplasmic reticulum lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    POLLEN DEFECTIVE IN GUIDANCE-like protein
    NP_176963.2
    • CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25480652..25484396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105466.3 → NP_176963.2  POLLEN DEFECTIVE IN GUIDANCE-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176963.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HVJ3, Q8VZM8, Q9C9W2
      UniProtKB/TrEMBL
      A0A178W5K7
      Conserved Domains (1) summary
      pfam05346
      Location:303 → 611
      DUF747; Eukaryotic membrane protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HVJ3.1

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