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    Ubiquitin domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838267, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin domain-containing protein
    Primary source
    TAIR:AT1G16960
    Locus tag
    AT1G16960
    See related
    Araport:AT1G16960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F16.18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (5799741..5800887)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR protein Neighboring gene uncharacterized protein Neighboring gene ATP-dependent DNA helicase 2 subunit Ku70-like protein Neighboring gene trehalose-6-phosphate synthase Neighboring gene trehalose-phosphatase/synthase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101557.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin domain-containing protein
    NP_173140.1
    • Ubiquitin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Ubiquitin domain-containing protein (TAIR:AT1G53400.1); Has 325 Blast hits to 324 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 67; Plants - 89; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5799741..5800887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101557.3 → NP_173140.1  Ubiquitin domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173140.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8B5, A0A5S9USH9, Q9FZ55
      Conserved Domains (1) summary
      pfam16455
      Location:15 → 111
      UBD; Ubiquitin-binding domain
    Nucleotide Protein
    Heading Accession and Version

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