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Conserved domains on  [gi|15219965|ref|NP_173140|]
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Ubiquitin domain-containing protein [Arabidopsis thaliana]

Protein Classification

ubiquitin domain-containing protein( domain architecture ID 11242943)

ubiquitin domain-containing protein; similar to Danio rerio ubiquitin domain-containing protein 1 (UBTD1) that may be involved in the regulation of cellular senescence; contains a ubiquitin-binding (UBD) domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UBD pfam16455
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 15-113 6.30e-51

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


:

Pssm-ID: 465122  Cd Length: 101  Bit Score: 156.20  E-value: 6.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219965    15 EKIRRPKTWKHPQPISRDELTQMREEFWDTapHYGGKKEIWDALRAAA---EEDDLSLAQTILESAGVIVQNTDLTI-CY 90
Cdd:pfam16455   1 KPLRKPHPWKSDRPWTRAQLDRERDEFFDT--RVTGRPEIWDALRAAAevlEEGDLATAQAILDAAGITLPTGDLTDgCY 78

                          90       100
                  ....*....|....*....|...
gi 15219965    91 DEKGSKYELPKYVLRDPSNLIPT 113
Cdd:pfam16455  79 DELGNLYRLPEYVVSDPTNLIED 101
 
Name Accession Description Interval E-value
UBD pfam16455
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 15-113 6.30e-51

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


Pssm-ID: 465122  Cd Length: 101  Bit Score: 156.20  E-value: 6.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219965    15 EKIRRPKTWKHPQPISRDELTQMREEFWDTapHYGGKKEIWDALRAAA---EEDDLSLAQTILESAGVIVQNTDLTI-CY 90
Cdd:pfam16455   1 KPLRKPHPWKSDRPWTRAQLDRERDEFFDT--RVTGRPEIWDALRAAAevlEEGDLATAQAILDAAGITLPTGDLTDgCY 78

                          90       100
                  ....*....|....*....|...
gi 15219965    91 DEKGSKYELPKYVLRDPSNLIPT 113
Cdd:pfam16455  79 DELGNLYRLPEYVVSDPTNLIED 101
 
Name Accession Description Interval E-value
UBD pfam16455
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 15-113 6.30e-51

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


Pssm-ID: 465122  Cd Length: 101  Bit Score: 156.20  E-value: 6.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219965    15 EKIRRPKTWKHPQPISRDELTQMREEFWDTapHYGGKKEIWDALRAAA---EEDDLSLAQTILESAGVIVQNTDLTI-CY 90
Cdd:pfam16455   1 KPLRKPHPWKSDRPWTRAQLDRERDEFFDT--RVTGRPEIWDALRAAAevlEEGDLATAQAILDAAGITLPTGDLTDgCY 78

                          90       100
                  ....*....|....*....|...
gi 15219965    91 DEKGSKYELPKYVLRDPSNLIPT 113
Cdd:pfam16455  79 DELGNLYRLPEYVVSDPTNLIED 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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