P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source: TAIR:AT1G02670
Locus tag: AT1G02670
See related: Araport:AT1G02670
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T14P4.5; T14P4_5
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 17

Sequence:: Chromosome: 1; NC_003070.9 (575922..580532)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP-dependent chromatin remodeler activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: P-loop containing nucleoside triphosphate hydrolases superfamily protein

NP_171767.1

P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1); Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141; Bacteria - 6646; Metazoa - 3824; Fungi - 4666; Plants - 1875; Viruses - 121; Other Eukaryotes - 3385 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

575922..580532

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100147.2 → NP_171767.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_171767.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9SA46, F4HXL1

Conserved Domains (3) summary

cd00046
Location:154 → 306

DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

pfam00176
Location:137 → 440

SNF2_N; SNF2 family N-terminal domain

pfam00271
Location:506 → 622

Helicase_C; Helicase conserved C-terminal domain
NM_001331350.1 → NP_001321903.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W9N4, A0A1P8ASB2
NM_001331351.1 → NP_001321902.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ASB1, A0A5S9SA46
NM_001331352.1 → NP_001321905.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W9N4, A0A1P8ASE4
NM_001331353.1 → NP_001321904.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178W9N4, A0A1P8ASB4
NM_001331354.1 → NP_001321907.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ASG8, A0A5S9SA46, A0A654E662

Conserved Domains (2) summary

COG0553
Location:61 → 663

HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

cd18008
Location:96 → 350

DEXDc_SHPRH-like; DEXH-box helicase domain of SHPRH-like proteins
NM_001331355.1 → NP_001321906.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ASC7, A0A5S9SA46