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    something about silencing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822449, updated on 18-Sep-2024

    Summary

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    Official Full Name
    something about silencing protein
    Primary source
    TAIR:AT3G28230
    Locus tag
    AT3G28230
    See related
    Araport:AT3G28230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (10529215..10530199)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like family protein Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125255.1
    NM_113742.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    something about silencing protein
    NP_001118727.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_189463.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 374 Blast hits to 360 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 115; Plants - 56; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10529215..10530199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125255.1 → NP_001118727.1  something about silencing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118727.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKU5, A0MEY9, F4IZ10
      Conserved Domains (1) summary
      pfam09368
      Location:99 → 172
      Sas10; Sas10 C-terminal domain

    2. NM_113742.3 → NP_189463.2  something about silencing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189463.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKU5, A0MEY9, Q9LHE2
      Conserved Domains (1) summary
      pfam09368
      Location:98 → 171
      Sas10; Sas10 C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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