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Conserved domains on  [gi|145339025|ref|NP_189463|]
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something about silencing protein [Arabidopsis thaliana]

Protein Classification

Sas10 domain-containing protein( domain architecture ID 10558778)

Sas10 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sas10 pfam09368
Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) ...
 98-171 1.60e-22

Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.


:

Pssm-ID: 462775 [Multi-domain]  Cd Length: 74  Bit Score: 85.28  E-value: 1.60e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 145339025   98 VDGRRLISNQMASNRGLTRKRNKDHKNPRKKYRDQHKKIVINRKGQVRDIRTQVGPYAGETRGINPYTSRSIRI 171
Cdd:pfam09368   1 EDGKRKITYQIEKNKGLTPHRKKENRNPRVKKRYKYEKAKKKRKSQVRVVREEGGGYGGETTGIKTNVVRSVKL 74
 
Name Accession Description Interval E-value
Sas10 pfam09368
Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) ...
 98-171 1.60e-22

Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.


Pssm-ID: 462775 [Multi-domain]  Cd Length: 74  Bit Score: 85.28  E-value: 1.60e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 145339025   98 VDGRRLISNQMASNRGLTRKRNKDHKNPRKKYRDQHKKIVINRKGQVRDIRTQVGPYAGETRGINPYTSRSIRI 171
Cdd:pfam09368   1 EDGKRKITYQIEKNKGLTPHRKKENRNPRVKKRYKYEKAKKKRKSQVRVVREEGGGYGGETTGIKTNVVRSVKL 74
 
Name Accession Description Interval E-value
Sas10 pfam09368
Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) ...
 98-171 1.60e-22

Sas10 C-terminal domain; Sas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.


Pssm-ID: 462775 [Multi-domain]  Cd Length: 74  Bit Score: 85.28  E-value: 1.60e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 145339025   98 VDGRRLISNQMASNRGLTRKRNKDHKNPRKKYRDQHKKIVINRKGQVRDIRTQVGPYAGETRGINPYTSRSIRI 171
Cdd:pfam09368   1 EDGKRKITYQIEKNKGLTPHRKKENRNPRVKKRYKYEKAKKKRKSQVRVVREEGGGYGGETTGIKTNVVRSVKL 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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