U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BBX12 B-box type zinc finger protein with CCT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817915, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BBX12
    Official Full Name
    B-box type zinc finger protein with CCT domain-containing protein
    Primary source
    TAIR:AT2G33500
    Locus tag
    AT2G33500
    See related
    Araport:AT2G33500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    B-box domain protein 12; F4P9.27; F4P9_27
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BBX12 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (14187914..14190278, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein 1 Neighboring gene NAC domain containing protein 41 Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROID-INSENSITIVE1. Karlova R, et al. Plant Cell, 2006 Mar. PMID 16473966, Free PMC Article
    2. Identification of LOV KELCH PROTEIN2 (LKP2)-interacting factors that can recruit LKP2 to nuclear bodies. Fukamatsu Y, et al. Plant Cell Physiol, 2005 Aug. PMID 15937324
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_179880.2
    NM_201860.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    B-box type zinc finger protein with CCT domain-containing protein
    NP_850211.1
    • B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3455 Blast hits to 2237 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3332; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
    NP_973589.1
    • B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14187914..14190278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201860.2 → NP_973589.1  B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973589.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTN5, A0A5S9X3U3, A0A7G2EE43, C0SV72
      Conserved Domains (3) summary
      cd19821
      Location:11 → 54
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:356 → 398
      CCT; CCT motif
      cl00034
      Location:54 → 94
      Bbox_SF; B-box-type zinc finger superfamily

    2. NM_179880.2 → NP_850211.1  B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850211.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22800, Q8H0T2, Q8L7Q6
      UniProtKB/TrEMBL
      A0A178VTN5, A0A7G2EE43
      Conserved Domains (3) summary
      smart00336
      Location:7 → 54
      BBOX; B-Box-type zinc finger
      cd00021
      Location:54 → 83
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      pfam06203
      Location:357 → 399
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22800.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools