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    UBQ, helicase-c and DEAD-like helicase domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830705, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UBQ, helicase-c and DEAD-like helicase domain-containing protein
    Primary source
    TAIR:AT5G08110
    Locus tag
    AT5G08110
    See related
    Araport:AT5G08110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22D6.50; T22D6_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (2594716..2600192, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene movement protein binding protein 2C Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RecQ-like helicase HRQ1 is involved in DNA crosslink repair in Arabidopsis in a common pathway with the Fanconi anemia-associated nuclease FAN1 and the postreplicative repair ATPase RAD5A. Röhrig S, et al. New Phytol, 2018 Jun. PMID 29577315
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtHRQ1 is epistatic to the ATPase RAD5A for intra- as well as interstrand crosslinking repair.[AtHRQ1]
      Title: The RecQ-like helicase HRQ1 is involved in DNA crosslink repair in Arabidopsis in a common pathway with the Fanconi anemia-associated nuclease FAN1 and the postreplicative repair ATPase RAD5A.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120893.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within interstrand cross-link repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UBQ, helicase-c and DEAD-like helicase domain-containing protein
    NP_196428.2
    • nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2594716..2600192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342980.1 → NP_001330594.1  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBB3, A0A654FZB2

    2. NM_001342981.1 → NP_001330595.1  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9T1, A0A1P8BBA5, A0A5S9Y2F4

    3. NM_120893.3 → NP_196428.2  UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196428.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZB2, F4K9K8
      Conserved Domains (5) summary
      cd00196
      Location:17 → 85
      UBQ; Ubiquitin-like proteins
      TIGR03817
      Location:358 → 1138
      DECH_helic; helicase/secretion neighborhood putative DEAH-box helicase
      pfam00270
      Location:395 → 528
      DEAD; DEAD/DEAH box helicase
      pfam00271
      Location:655 → 754
      Helicase_C; Helicase conserved C-terminal domain
      pfam09369
      Location:1027 → 1110
      DUF1998; Domain of unknown function (DUF1998)
    Nucleotide Protein
    Heading Accession and Version

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